Variant report

Variant	rs7946449
Chromosome Location	chr11:76362538-76362539
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76357796..76360555-chr11:76361660..76365376,3	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10751258	0.84[EUR][1000 genomes]
rs11236828	0.84[EUR][1000 genomes]
rs11602112	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11602550	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1892952	0.83[AMR][1000 genomes]
rs4944113	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4945095	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7950838	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043912	chr11:76301316-76439095	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1039451	chr11:76301316-76440221	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv555448	chr11:76354115-76383806	Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv527708	chr11:76359722-76363817	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76350800-76365000	Weak transcription	Lung	lung
2	chr11:76359200-76364800	Weak transcription	Right Atrium	heart
3	chr11:76361200-76364200	Weak transcription	Colonic Mucosa	Colon
4	chr11:76361400-76363800	Weak transcription	Fetal Kidney	kidney
5	chr11:76361400-76363800	Weak transcription	Fetal Lung	lung
6	chr11:76361400-76363800	Weak transcription	Fetal Stomach	stomach
7	chr11:76361400-76364000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:76361400-76364200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:76361400-76364200	Weak transcription	Fetal Intestine Small	intestine
10	chr11:76361400-76364400	Weak transcription	Aorta	Aorta
11	chr11:76361400-76364400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:76361400-76364800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:76361400-76364800	Weak transcription	Left Ventricle	heart
14	chr11:76361400-76365200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:76361400-76365200	Weak transcription	Fetal Heart	heart
16	chr11:76361400-76365200	Weak transcription	Right Ventricle	heart
17	chr11:76361600-76364000	Weak transcription	NHLF	lung
18	chr11:76361600-76364200	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:76361600-76364200	Weak transcription	Ovary	ovary
20	chr11:76361600-76364800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:76361800-76364400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:76361800-76364800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:76361800-76364800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:76362400-76364000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:76362400-76364200	Weak transcription	Adipose Nuclei	Adipose

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