Variant report

Variant	rs79479129
Chromosome Location	chr3:47201958-47201959
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47184823..47187568-chr3:47200664..47202534,2	K562	blood:
2	chr3:47175569..47177603-chr3:47199664..47202518,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1007714	chr3:47084387-47331570	Transcr. at gene 5' and 3' Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv590210	chr3:47126543-47214122	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv590211	chr3:47189485-47256057	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv3801	chr3:47201530-47246438	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47166000-47204600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:47166600-47204200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:47167400-47202400	Weak transcription	HSMM	muscle
4	chr3:47183600-47202200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:47183800-47202200	Weak transcription	NHEK	skin
6	chr3:47183800-47203000	Weak transcription	Colonic Mucosa	Colon
7	chr3:47184600-47202200	Weak transcription	Esophagus	oesophagus
8	chr3:47188600-47202000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:47191200-47202800	Weak transcription	HMEC	breast
10	chr3:47192200-47202000	Weak transcription	Fetal Lung	lung
11	chr3:47194400-47203600	Weak transcription	NH-A	brain
12	chr3:47196400-47203600	Enhancers	Liver	Liver
13	chr3:47196600-47203600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr3:47197000-47203600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr3:47197000-47203600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:47197000-47203800	Enhancers	Primary B cells from peripheral blood	blood
17	chr3:47197000-47203800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:47197200-47203800	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr3:47197200-47203800	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr3:47197400-47204600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:47197600-47202200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:47198000-47202800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr3:47198000-47203600	Enhancers	Primary T cells fromperipheralblood	blood
24	chr3:47198200-47202400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:47198200-47202800	Enhancers	Primary B cells from cord blood	blood
26	chr3:47198200-47203600	Weak transcription	Fetal Kidney	kidney
27	chr3:47198200-47203600	Weak transcription	NHDF-Ad	bronchial
28	chr3:47198400-47202200	Weak transcription	A549	lung
29	chr3:47198400-47204000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr3:47198800-47202200	Weak transcription	Pancreas	Pancrea
31	chr3:47198800-47202200	Weak transcription	Right Atrium	heart
32	chr3:47198800-47202200	Weak transcription	Right Ventricle	heart
33	chr3:47198800-47203600	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr3:47198800-47204000	Weak transcription	Aorta	Aorta
35	chr3:47198800-47204200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr3:47198800-47204200	Weak transcription	Lung	lung
37	chr3:47199200-47203600	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr3:47199400-47202200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:47199400-47203600	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr3:47199600-47202600	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr3:47199600-47203200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr3:47199800-47202200	Enhancers	Primary T cells from cord blood	blood
43	chr3:47199800-47202400	Enhancers	HepG2	liver
44	chr3:47199800-47202600	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr3:47199800-47203000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr3:47199800-47203400	Enhancers	Adipose Nuclei	Adipose
47	chr3:47199800-47203600	Enhancers	Thymus	Thymus
48	chr3:47199800-47204000	Enhancers	Brain Substantia Nigra	brain
49	chr3:47199800-47204000	Enhancers	Small Intestine	intestine
50	chr3:47200000-47202800	Weak transcription	Placenta Amnion	Placenta Amnion

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