Variant report

Variant	rs794794
Chromosome Location	chr6:15319305-15319306
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15318521..15320640-chr6:15322332..15324913,2	MCF-7	breast:
2	chr6:15317761..15319787-chr6:15431054..15433674,2	K562	blood:
3	chr6:15317056..15319341-chr6:15321670..15323644,3	K562	blood:
4	chr6:15307880..15309587-chr6:15317665..15320431,3	K562	blood:

Variant related genes	Relation type
ENSG00000201519	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3950	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs707827	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs707833	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs794782	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs794791	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs794796	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv538144	chr6:15310696-15364984	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15309200-15320600	Weak transcription	A549	lung
2	chr6:15311000-15322200	Weak transcription	Fetal Intestine Small	intestine
3	chr6:15311200-15330600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:15313200-15320400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:15313200-15322400	Weak transcription	HMEC	breast
6	chr6:15313200-15322800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:15313200-15323400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:15313200-15326600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:15313400-15322600	Weak transcription	Osteobl	bone
10	chr6:15313600-15322800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:15313800-15321000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:15313800-15321000	Weak transcription	NHEK	skin
13	chr6:15313800-15321200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:15313800-15325400	Weak transcription	Liver	Liver
15	chr6:15314000-15322000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:15314000-15322400	Weak transcription	Gastric	stomach
17	chr6:15314000-15323800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:15314200-15324000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:15314200-15326600	Weak transcription	Ovary	ovary
20	chr6:15314400-15322200	Weak transcription	Pancreas	Pancrea
21	chr6:15314400-15327600	Weak transcription	Aorta	Aorta
22	chr6:15314600-15322600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:15315000-15322600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr6:15315400-15323200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr6:15315600-15320400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr6:15315600-15321200	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr6:15315600-15321400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:15315600-15323400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr6:15315800-15319600	Enhancers	Primary T cells from cord blood	blood
30	chr6:15316000-15320000	Enhancers	Left Ventricle	heart
31	chr6:15316000-15321200	Enhancers	H1 Cell Line	embryonic stem cell
32	chr6:15316400-15319400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:15316400-15320000	Enhancers	Primary T cells fromperipheralblood	blood
34	chr6:15316400-15320400	Enhancers	HepG2	liver
35	chr6:15316400-15320600	Enhancers	Primary B cells from peripheral blood	blood
36	chr6:15316600-15322400	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr6:15316800-15319600	Enhancers	Brain Cingulate Gyrus	brain
38	chr6:15316800-15321400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:15317000-15319400	Enhancers	Brain Angular Gyrus	brain
40	chr6:15317000-15319600	Enhancers	Brain Substantia Nigra	brain
41	chr6:15317000-15320600	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr6:15317000-15321200	Flanking Active TSS	GM12878-XiMat	blood
43	chr6:15317200-15321600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:15317200-15323600	Enhancers	Primary hematopoietic stem cells	blood
45	chr6:15317400-15319400	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr6:15317400-15320400	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr6:15317400-15321200	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr6:15317400-15323600	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr6:15317600-15319800	Enhancers	Brain Anterior Caudate	brain
50	chr6:15317800-15319400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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