Variant report

Variant	rs7948606
Chromosome Location	chr11:62802824-62802825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11231340	0.84[ASN][1000 genomes]
rs11231342	0.84[ASN][1000 genomes]
rs1944037	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3935736	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7130180	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9971529	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532283	chr11:62201358-62863475	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1433 gene(s)	inside rSNPs	diseases
2	nsv1041770	chr11:62610353-62871767	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	263 gene(s)	inside rSNPs	diseases
3	esv34011	chr11:62652779-62993702	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv523357	chr11:62801148-62838511	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:62802600-62803000	Enhancers	Pancreas	Pancrea
2	chr11:62802600-62803200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:62802800-62803000	Enhancers	Brain Angular Gyrus	brain
4	chr11:62802800-62803000	Enhancers	Brain Anterior Caudate	brain
5	chr11:62802800-62803000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr11:62802800-62803000	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr11:62802800-62803000	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
8	chr11:62802800-62803000	Enhancers	Stomach Mucosa	stomach
9	chr11:62802800-62803000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
10	chr11:62802800-62803000	Bivalent/Poised TSS	Hela-S3	cervix
11	chr11:62802800-62803000	Enhancers	NHEK	skin
12	chr11:62802800-62803200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:62802800-62803200	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
14	chr11:62802800-62803400	Flanking Active TSS	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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