Variant report

Variant	rs7950834
Chromosome Location	chr11:108007739-108007740
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:108005852-108008538	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:108006690..108008938-chr11:108043099..108044997,2	K562	blood:
2	chr11:108006504..108008014-chr11:108015892..108017612,2	K562	blood:
3	chr11:108001584..108003508-chr11:108007243..108008839,2	K562	blood:
4	chr11:108006518..108009087-chr11:108010331..108012579,3	K562	blood:

Variant related genes	Relation type
ACAT1	TF binding region
ENSG00000075239	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11212516	0.94[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2356519	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4753830	0.83[AFR][1000 genomes]
rs7951499	0.85[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1039549	chr11:107950572-108034548	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1040522	chr11:107969357-108049672	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107993200-108013200	Weak transcription	Fetal Thymus	thymus
2	chr11:107993200-108018600	Weak transcription	Thymus	Thymus
3	chr11:107993200-108021800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:107993200-108030000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:107993200-108069600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:107993400-108009600	Weak transcription	Colonic Mucosa	Colon
7	chr11:107993400-108011200	Weak transcription	Esophagus	oesophagus
8	chr11:107993400-108012600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:107993400-108013200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:107993400-108014000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:107993400-108017800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:107993600-108013200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:107993600-108018800	Weak transcription	Fetal Kidney	kidney
14	chr11:107993800-108010800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:107994000-108029600	Weak transcription	Fetal Brain Male	brain
16	chr11:107994600-108009400	Weak transcription	Fetal Brain Female	brain
17	chr11:107994600-108013800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:107994800-108009400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:107994800-108011600	Weak transcription	Fetal Intestine Small	intestine
20	chr11:107995000-108018600	Weak transcription	Hela-S3	cervix
21	chr11:107995200-108010800	Weak transcription	Brain Germinal Matrix	brain
22	chr11:107995200-108011200	Weak transcription	Primary B cells from cord blood	blood
23	chr11:107995200-108011400	Weak transcription	Aorta	Aorta
24	chr11:107995400-108011200	Weak transcription	Lung	lung
25	chr11:107995400-108011200	Weak transcription	Spleen	Spleen
26	chr11:107995400-108011600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:107995400-108013000	Weak transcription	Dnd41	blood
28	chr11:107995400-108013200	Weak transcription	Gastric	stomach
29	chr11:107995600-108009400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:107995600-108011800	Weak transcription	Small Intestine	intestine
31	chr11:107995600-108017800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr11:107995800-108011200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:107995800-108011400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr11:107995800-108013000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr11:107996000-108021400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr11:107996200-108019200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr11:107999000-108009400	Weak transcription	Fetal Heart	heart
38	chr11:107999000-108011800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:107999000-108013200	Weak transcription	Psoas Muscle	Psoas
40	chr11:107999200-108007800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:108000200-108009400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:108001800-108008200	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr11:108002200-108069600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:108002400-108009600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr11:108002400-108011200	Weak transcription	Right Ventricle	heart
46	chr11:108002400-108040200	Strong transcription	Liver	Liver
47	chr11:108002800-108008400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:108002800-108008400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:108002800-108010000	Strong transcription	HSMM	muscle
50	chr11:108002800-108024800	Strong transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links