Variant report

Variant	rs79519650
Chromosome Location	chr3:17412927-17412928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv428080	chr3:17367870-17539943	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv589842	chr3:17381380-17538921	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1009700	chr3:17391240-17486671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv470439	chr3:17394615-17538921	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv589843	chr3:17412690-17525505	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17339400-17442200	Weak transcription	Fetal Intestine Small	intestine
2	chr3:17344400-17439000	Weak transcription	Aorta	Aorta
3	chr3:17365600-17413000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:17379800-17414400	Weak transcription	HSMM	muscle
5	chr3:17398400-17414600	Weak transcription	NHDF-Ad	bronchial
6	chr3:17398600-17414200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:17398800-17413000	Weak transcription	Ovary	ovary
8	chr3:17398800-17414600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:17398800-17430200	Weak transcription	Pancreas	Pancrea
10	chr3:17398800-17447000	Weak transcription	Fetal Stomach	stomach
11	chr3:17399200-17413000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:17401600-17432600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr3:17402400-17443200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:17402600-17451000	Weak transcription	Gastric	stomach
15	chr3:17403000-17443000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:17403200-17413600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:17403200-17449200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr3:17403400-17442200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr3:17404200-17449200	Weak transcription	Esophagus	oesophagus
20	chr3:17405000-17432400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr3:17405200-17414200	Weak transcription	A549	lung
22	chr3:17406400-17442000	Weak transcription	Lung	lung
23	chr3:17407600-17443400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr3:17407800-17419400	Weak transcription	Brain Hippocampus Middle	brain
25	chr3:17409200-17430800	Weak transcription	Fetal Muscle Leg	muscle
26	chr3:17409200-17435000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:17409400-17414400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:17409600-17413000	Weak transcription	HepG2	liver
29	chr3:17410000-17426800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr3:17410200-17445200	Weak transcription	Right Ventricle	heart
31	chr3:17410200-17445600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr3:17410200-17447200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr3:17410200-17451400	Weak transcription	Brain Angular Gyrus	brain
34	chr3:17410400-17443400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr3:17410400-17447800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:17410600-17418400	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr3:17410800-17413200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr3:17410800-17414600	Strong transcription	Dnd41	blood
39	chr3:17411000-17413200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr3:17411000-17413800	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr3:17411000-17418400	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr3:17411200-17414400	Weak transcription	Colon Smooth Muscle	Colon
43	chr3:17411200-17418400	Strong transcription	Primary B cells from peripheral blood	blood
44	chr3:17411200-17467400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr3:17411400-17413200	Weak transcription	Fetal Thymus	thymus
46	chr3:17411600-17414800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr3:17411600-17424000	Weak transcription	Spleen	Spleen
48	chr3:17411600-17425200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr3:17411600-17430800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr3:17411600-17442000	Weak transcription	Fetal Muscle Trunk	muscle

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