Variant report

Variant	rs7952159
Chromosome Location	chr11:120622379-120622380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11217999	0.95[ASN][1000 genomes]
rs11606421	0.95[ASN][1000 genomes]
rs73576552	0.95[ASN][1000 genomes]
rs9667343	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1041465	chr11:120582595-120630114	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv541180	chr11:120582595-120630114	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120616800-120625200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:120617200-120624400	Enhancers	Brain Germinal Matrix	brain
3	chr11:120617400-120629800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:120617600-120622600	Enhancers	Fetal Brain Female	brain
5	chr11:120618200-120630000	Weak transcription	Right Atrium	heart
6	chr11:120620000-120622600	Enhancers	Brain Hippocampus Middle	brain
7	chr11:120620000-120623800	Enhancers	Brain Substantia Nigra	brain
8	chr11:120620200-120622800	Enhancers	Brain Angular Gyrus	brain
9	chr11:120620600-120622400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:120621200-120622800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr11:120621400-120623200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr11:120621400-120623200	Enhancers	Brain Cingulate Gyrus	brain
13	chr11:120621600-120622600	Enhancers	Fetal Brain Male	brain
14	chr11:120621600-120623000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:120621800-120623200	Enhancers	Ovary	ovary
16	chr11:120621800-120623600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:120621800-120624000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr11:120622000-120623800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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