Variant report

Variant	rs7954900
Chromosome Location	chr12:57018664-57018665
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:57012523..57015278-chr12:57016203..57018882,3	K562	blood:
2	chr12:57017329..57019814-chr12:57037234..57039904,2	MCF-7	breast:
3	chr12:57017250..57020685-chr12:57038536..57040931,3	K562	blood:
4	chr12:56567236..56569634-chr12:57017080..57019271,2	K562	blood:
5	chr12:57002945..57005417-chr12:57018458..57021236,3	K562	blood:
6	chr12:57007863..57010268-chr12:57017258..57018807,2	K562	blood:
7	chr12:57006722..57009365-chr12:57018033..57019996,2	K562	blood:
8	chr12:57002945..57004692-chr12:57018540..57021236,2	K562	blood:
9	chr12:57016483..57019322-chr12:57028568..57030287,2	MCF-7	breast:
10	chr12:56989810..56992363-chr12:57017983..57019817,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000139613	Chromatin interaction
ENSG00000110955	Chromatin interaction
ENSG00000207031	Chromatin interaction
ENSG00000076108	Chromatin interaction

rs_ID	r²[population]
rs7956952	0.96[AFR][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56979600-57020400	Strong transcription	Fetal Stomach	stomach
2	chr12:56987600-57021000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr12:56988400-57021600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:56988800-57021600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr12:56989400-57019000	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr12:56989400-57020000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr12:56991000-57022000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr12:56994200-57021200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:56995000-57021400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr12:57009800-57022200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr12:57010400-57022200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr12:57010800-57022000	Weak transcription	Small Intestine	intestine
13	chr12:57011000-57021400	Weak transcription	Fetal Brain Male	brain
14	chr12:57011400-57021000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr12:57011400-57022000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr12:57011400-57022000	Weak transcription	Brain Germinal Matrix	brain
17	chr12:57011400-57022200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr12:57011400-57022200	Weak transcription	Colonic Mucosa	Colon
19	chr12:57011400-57022200	Weak transcription	Stomach Mucosa	stomach
20	chr12:57011400-57022400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:57011400-57022400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr12:57011400-57022400	Weak transcription	Aorta	Aorta
23	chr12:57011400-57022400	Weak transcription	Gastric	stomach
24	chr12:57011400-57022600	Weak transcription	Esophagus	oesophagus
25	chr12:57011800-57021800	Strong transcription	Fetal Thymus	thymus
26	chr12:57011800-57022200	Weak transcription	Fetal Brain Female	brain
27	chr12:57013400-57018800	Strong transcription	Hela-S3	cervix
28	chr12:57013800-57019800	Strong transcription	GM12878-XiMat	blood
29	chr12:57014000-57019800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr12:57014800-57019000	Strong transcription	Osteobl	bone
31	chr12:57015000-57018800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
32	chr12:57015000-57019600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr12:57015000-57020000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr12:57015000-57022000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr12:57015200-57020000	Weak transcription	NHEK	skin
36	chr12:57015200-57022000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr12:57015400-57019600	Weak transcription	Dnd41	blood
38	chr12:57015400-57020000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr12:57015400-57021000	Weak transcription	Lung	lung
40	chr12:57015400-57022200	Weak transcription	Fetal Kidney	kidney
41	chr12:57015600-57022000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr12:57015600-57022200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr12:57016200-57021000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
44	chr12:57016400-57020800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr12:57016600-57020200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr12:57016600-57021000	Genic enhancers	Primary T cells fromperipheralblood	blood
47	chr12:57016800-57019800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr12:57016800-57022000	Weak transcription	HUVEC	blood vessel
49	chr12:57017000-57018800	Genic enhancers	K562	blood
50	chr12:57017000-57019800	Weak transcription	Placenta	Placenta

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