Variant report
| Variant | rs7955024 |
|---|---|
| Chromosome Location | chr12:84945747-84945748 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10735473 | 0.85[EUR][1000 genomes] |
| rs10746323 | 0.85[EUR][1000 genomes] |
| rs10746324 | 0.85[EUR][1000 genomes] |
| rs10779104 | 0.86[EUR][1000 genomes] |
| rs11116412 | 0.81[EUR][1000 genomes] |
| rs1380405 | 0.85[EUR][1000 genomes] |
| rs1380408 | 0.85[EUR][1000 genomes] |
| rs1380411 | 0.85[EUR][1000 genomes] |
| rs1380412 | 0.85[EUR][1000 genomes] |
| rs1380415 | 0.85[EUR][1000 genomes] |
| rs1459606 | 0.85[EUR][1000 genomes] |
| rs1459608 | 0.85[EUR][1000 genomes] |
| rs1903190 | 0.85[EUR][1000 genomes] |
| rs2446663 | 0.85[EUR][1000 genomes] |
| rs2446664 | 0.85[EUR][1000 genomes] |
| rs2446665 | 0.85[EUR][1000 genomes] |
| rs2446666 | 0.85[EUR][1000 genomes] |
| rs2468284 | 0.84[EUR][1000 genomes] |
| rs2468300 | 0.81[EUR][1000 genomes] |
| rs2468302 | 0.84[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs2611288 | 0.85[EUR][1000 genomes] |
| rs2611292 | 0.81[EUR][1000 genomes] |
| rs2730703 | 0.84[EUR][1000 genomes] |
| rs2956440 | 0.85[EUR][1000 genomes] |
| rs4237881 | 0.85[CEU][hapmap] |
| rs4287367 | 0.81[EUR][1000 genomes] |
| rs7967594 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs898298 | 0.85[EUR][1000 genomes] |
| rs979879 | 0.85[EUR][1000 genomes] |
| rs982022 | 0.82[EUR][1000 genomes] |
| rs982023 | 0.85[EUR][1000 genomes] |
| rs983151 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899369 | chr12:84536107-85067814 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv1035863 | chr12:84710250-85331290 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv1035236 | chr12:84790507-85350433 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 4 | nsv899373 | chr12:84891803-84999922 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv1039601 | chr12:84926324-84984595 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:84944800-84945800 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chr12:84945200-84946000 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 3 | chr12:84945400-84945800 | Enhancers | Adipose Nuclei | Adipose |
