Variant report

Variant	rs7956134
Chromosome Location	chr12:29352459-29352460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10743647	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10743648	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10743649	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10771494	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10843343	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11050098	0.83[AMR][1000 genomes]
rs11050114	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1826800	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4105125	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4105126	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4105128	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4930858	0.83[AMR][1000 genomes]
rs4930859	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4931158	0.83[AMR][1000 genomes]
rs4931163	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4931165	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6487778	0.83[AMR][1000 genomes]
rs7297542	0.83[AMR][1000 genomes]
rs7956130	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs924107	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs924109	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs958478	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1053641	chr12:29268813-29854413	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29325400-29364600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:29328800-29354200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr12:29336000-29354000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr12:29346000-29360800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr12:29350200-29353200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr12:29352000-29355600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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