Variant report
| Variant | rs7956459 |
|---|---|
| Chromosome Location | chr12:40857966-40857967 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-MUC19-1 | chr12:40857922-40858005 | NONHSAT027728 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs1529376 | 1.00[AMR][1000 genomes] |
| rs17491082 | 1.00[AMR][1000 genomes] |
| rs17491410 | 1.00[AMR][1000 genomes] |
| rs17491473 | 1.00[AMR][1000 genomes] |
| rs17491673 | 1.00[AMR][1000 genomes] |
| rs17520445 | 1.00[AMR][1000 genomes] |
| rs17520459 | 1.00[AMR][1000 genomes] |
| rs17520606 | 1.00[AMR][1000 genomes] |
| rs1992609 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7307289 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899033 | chr12:40758652-41122288 | Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv558606 | chr12:40837331-40863052 | Enhancers | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv518952 | chr12:40857620-40867333 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
