Variant report

Variant	rs7956769
Chromosome Location	chr12:124235890-124235891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11573005	1.00[CEU][hapmap]
rs11573006	1.00[CEU][hapmap]
rs1568031	1.00[CEU][hapmap]
rs6488882	1.00[CEU][hapmap]
rs6488885	1.00[CEU][hapmap]
rs6488889	1.00[CEU][hapmap]
rs7310965	0.92[EUR][1000 genomes]
rs73420345	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73420351	0.93[EUR][1000 genomes]
rs73420355	0.93[EUR][1000 genomes]
rs7964934	1.00[CEU][hapmap]
rs7965292	1.00[CEU][hapmap]
rs7973689	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124201800-124247800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:124202200-124242600	Strong transcription	Fetal Stomach	stomach
3	chr12:124202600-124245200	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr12:124202600-124245200	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr12:124203400-124239800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:124203600-124242400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:124203600-124242400	Strong transcription	Fetal Muscle Leg	muscle
8	chr12:124203600-124244600	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr12:124203600-124246000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr12:124203800-124240000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr12:124203800-124245000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr12:124203800-124248000	Strong transcription	Dnd41	blood
13	chr12:124204000-124239800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr12:124205000-124242400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr12:124206000-124241800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr12:124206200-124237200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr12:124206400-124237600	Strong transcription	Adipose Nuclei	Adipose
18	chr12:124208800-124244800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr12:124209200-124236000	Strong transcription	Duodenum Mucosa	Duodenum
20	chr12:124209200-124242600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr12:124209800-124239600	Strong transcription	Brain Germinal Matrix	brain
22	chr12:124213000-124243400	Strong transcription	Fetal Intestine Small	intestine
23	chr12:124215400-124236200	Strong transcription	H9 Cell Line	embryonic stem cell
24	chr12:124215400-124242600	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr12:124215400-124244800	Strong transcription	Liver	Liver
26	chr12:124215800-124240000	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr12:124215800-124242400	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr12:124217200-124240000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr12:124217400-124239800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr12:124220200-124236200	Strong transcription	Skeletal Muscle Male	skeletal muscle
31	chr12:124221800-124246200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr12:124223200-124240000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr12:124223400-124240000	Strong transcription	Fetal Intestine Large	intestine
34	chr12:124224200-124238800	Weak transcription	Fetal Kidney	kidney
35	chr12:124224200-124246400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr12:124226200-124239600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr12:124228000-124236000	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr12:124229400-124240000	Strong transcription	Primary B cells from peripheral blood	blood
39	chr12:124229800-124246400	Weak transcription	Psoas Muscle	Psoas
40	chr12:124230200-124246000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr12:124230800-124240000	Strong transcription	Fetal Brain Female	brain
42	chr12:124231000-124236000	Strong transcription	Gastric	stomach
43	chr12:124231600-124236000	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr12:124231600-124236200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr12:124231600-124239800	Strong transcription	Brain Anterior Caudate	brain
46	chr12:124231600-124239800	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr12:124231600-124240000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr12:124231600-124243400	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr12:124231800-124236000	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr12:124231800-124237400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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