Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10743973	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12301073	0.81[AMR][1000 genomes]
rs12315516	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12316914	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1574096	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1806427	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1871286	0.91[ASN][1000 genomes]
rs1904239	1.00[ASN][1000 genomes]
rs1904241	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1904242	0.93[ASN][1000 genomes]
rs4763743	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4763744	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6488475	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6488476	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6488481	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7133292	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7305426	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7312970	1.00[ASN][1000 genomes]
rs7954303	1.00[ASN][1000 genomes]
rs7962986	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7966813	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7968948	1.00[ASN][1000 genomes]
rs7968953	1.00[ASN][1000 genomes]
rs7972783	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7976590	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898804	chr12:12058411-12202173	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898805	chr12:12119414-12156322	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv19512	chr12:12130988-12147206	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12132200-12139200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr12:12136200-12145400	Weak transcription	Fetal Brain Male	brain
3	chr12:12137000-12137800	Weak transcription	Psoas Muscle	Psoas
4	chr12:12137200-12138000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr12:12137400-12138200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: