Variant report

Variant	rs7957784
Chromosome Location	chr12:32303793-32303794
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:32303348..32305774-chr12:32310093..32311635,2	K562	blood:
2	chr12:32303242..32304848-chr12:32309924..32311593,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12304056	1.00[AMR][1000 genomes]
rs12304066	1.00[AMR][1000 genomes]
rs161972	1.00[AMR][1000 genomes]
rs16919377	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55802552	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57735320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58039881	1.00[AMR][1000 genomes]
rs58186216	1.00[AMR][1000 genomes]
rs59313683	1.00[AMR][1000 genomes]
rs59549999	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60994230	1.00[AMR][1000 genomes]
rs6488035	0.87[AFR][1000 genomes]
rs7294637	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7295834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072003	1.00[AMR][1000 genomes]
rs74072005	1.00[AMR][1000 genomes]
rs74072006	1.00[AMR][1000 genomes]
rs74074440	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074443	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074445	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074446	1.00[AMR][1000 genomes]
rs7957620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7958620	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363806	chr12:31872264-32410283	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3508621	chr12:31872654-32410593	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3508622	chr12:31872654-32410593	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv976030	chr12:32153446-32307541	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv983498	chr12:32153446-32388092	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv898969	chr12:32224948-32375677	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1042317	chr12:32228872-32316774	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1041733	chr12:32247427-32312547	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
10	esv2751096	chr12:32280340-32702784	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv558171	chr12:32287259-32559693	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32269000-32340200	Weak transcription	Dnd41	blood
2	chr12:32287600-32312200	Weak transcription	HSMMtube	muscle
3	chr12:32287800-32304000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:32287800-32328400	Weak transcription	Aorta	Aorta
5	chr12:32292200-32312200	Weak transcription	HSMM	muscle
6	chr12:32293000-32306800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr12:32293000-32316000	Weak transcription	HUVEC	blood vessel
8	chr12:32293200-32309000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr12:32293600-32312400	Weak transcription	Fetal Stomach	stomach
10	chr12:32293600-32323600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr12:32293600-32369200	Weak transcription	Thymus	Thymus
12	chr12:32293800-32309000	Weak transcription	Brain Substantia Nigra	brain
13	chr12:32294200-32309000	Weak transcription	Brain Anterior Caudate	brain
14	chr12:32294200-32318200	Weak transcription	Primary T cells from cord blood	blood
15	chr12:32296200-32307200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr12:32296200-32313800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr12:32296800-32307200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:32298000-32305800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr12:32298000-32307000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr12:32298000-32308000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr12:32298000-32308800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr12:32298400-32306400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr12:32298400-32308800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr12:32298400-32312800	Weak transcription	Brain Angular Gyrus	brain
25	chr12:32298600-32303800	Weak transcription	Fetal Brain Female	brain
26	chr12:32299400-32312600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr12:32299400-32334800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr12:32299600-32346200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr12:32300200-32319200	Weak transcription	GM12878-XiMat	blood
30	chr12:32300200-32336600	Weak transcription	A549	lung
31	chr12:32300400-32312600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr12:32301400-32312400	Weak transcription	Osteobl	bone
33	chr12:32301600-32304200	Weak transcription	NHEK	skin
34	chr12:32301600-32304400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr12:32301600-32312200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr12:32301600-32316200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr12:32301800-32312800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr12:32302200-32312400	Weak transcription	NH-A	brain
39	chr12:32302600-32308800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr12:32302800-32304800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr12:32302800-32306800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr12:32302800-32307200	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr12:32303000-32305800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr12:32303000-32306000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr12:32303000-32306200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr12:32303000-32307200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr12:32303000-32307400	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr12:32303000-32308800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr12:32303000-32308800	Weak transcription	Ovary	ovary
50	chr12:32303000-32317800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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