Variant report

Variant	rs79590198
Chromosome Location	chr5:142686936-142686937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825941	chr5:142568715-142728031	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv33748	chr5:142638267-142699595	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv5041	chr5:142653189-142697896	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:142655800-142699200	Strong transcription	Dnd41	blood
2	chr5:142657800-142695400	Weak transcription	Pancreas	Pancrea
3	chr5:142658200-142694800	Weak transcription	Right Ventricle	heart
4	chr5:142658400-142714800	Weak transcription	Esophagus	oesophagus
5	chr5:142659800-142692600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:142664400-142693400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:142667400-142688800	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr5:142668600-142688800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr5:142668800-142693800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:142674400-142688200	Weak transcription	Psoas Muscle	Psoas
11	chr5:142677600-142697800	Weak transcription	Fetal Brain Male	brain
12	chr5:142678200-142687400	Weak transcription	Fetal Kidney	kidney
13	chr5:142678200-142687600	Weak transcription	Lung	lung
14	chr5:142678200-142695400	Weak transcription	Gastric	stomach
15	chr5:142678400-142687600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr5:142678400-142689200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr5:142678400-142691400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr5:142678400-142693400	Weak transcription	Aorta	Aorta
19	chr5:142678400-142693400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr5:142678400-142693600	Weak transcription	Brain Angular Gyrus	brain
21	chr5:142678400-142693800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:142678600-142688200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr5:142680200-142687200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr5:142680200-142687200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr5:142680200-142687600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr5:142680200-142688200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr5:142680200-142689000	Weak transcription	Small Intestine	intestine
28	chr5:142680200-142691000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr5:142680200-142691400	Weak transcription	Ovary	ovary
30	chr5:142680200-142691600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr5:142680200-142691800	Weak transcription	Brain Substantia Nigra	brain
32	chr5:142680400-142687600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr5:142680400-142688400	Weak transcription	Colon Smooth Muscle	Colon
34	chr5:142680400-142690800	Weak transcription	HepG2	liver
35	chr5:142681000-142689600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr5:142681800-142687800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr5:142682000-142691200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr5:142682200-142687400	Weak transcription	Placenta	Placenta
39	chr5:142682400-142688000	Weak transcription	HSMMtube	muscle
40	chr5:142682400-142689200	Weak transcription	HUVEC	blood vessel
41	chr5:142682600-142687400	Weak transcription	NH-A	brain
42	chr5:142682600-142698400	Weak transcription	Stomach Mucosa	stomach
43	chr5:142682800-142691400	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr5:142683200-142693800	Strong transcription	Primary T cells from cord blood	blood
45	chr5:142683200-142693800	Strong transcription	Fetal Muscle Trunk	muscle
46	chr5:142683200-142693800	Strong transcription	Fetal Thymus	thymus
47	chr5:142683400-142688200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr5:142683400-142693000	Strong transcription	Primary B cells from peripheral blood	blood
49	chr5:142683600-142688200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr5:142683800-142688600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links