Variant report
| Variant | rs7959020 |
|---|---|
| Chromosome Location | chr12:29247991-29247992 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10771462 | 0.82[AMR][1000 genomes] |
| rs11049998 | 0.95[AMR][1000 genomes] |
| rs11050024 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11050038 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11050069 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11050080 | 0.87[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs11050082 | 0.85[AMR][1000 genomes] |
| rs11050085 | 0.85[AMR][1000 genomes] |
| rs11050094 | 0.82[AMR][1000 genomes] |
| rs11050097 | 0.80[AMR][1000 genomes] |
| rs11050105 | 0.85[AMR][1000 genomes] |
| rs11050116 | 0.82[AMR][1000 genomes] |
| rs11050119 | 0.82[AMR][1000 genomes] |
| rs11537408 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11561209 | 0.98[ASN][1000 genomes] |
| rs12578244 | 0.87[AMR][1000 genomes] |
| rs12578576 | 0.82[ASN][1000 genomes] |
| rs4141944 | 0.87[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs7136405 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73073792 | 0.82[AMR][1000 genomes] |
| rs7308340 | 0.85[AMR][1000 genomes] |
| rs7316695 | 0.85[AMR][1000 genomes] |
| rs7972016 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7973139 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7974723 | 0.95[ASN][1000 genomes] |
| rs7976269 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs924108 | 0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532233 | chr12:29009388-29496179 | Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv995123 | chr12:29095272-29571558 | Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| 3 | esv2758301 | chr12:29110782-29289849 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | esv2759888 | chr12:29110782-29289849 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:29246400-29251800 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
