Variant report

Variant	rs7959149
Chromosome Location	chr12:9270132-9270133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12427063	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	nsv898738	chr12:9205030-9274394	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1048491	chr12:9208806-9544655	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	esv3504674	chr12:9243858-9318016	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3502154	chr12:9243906-9317851	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv3502155	chr12:9243906-9317851	Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv3504685	chr12:9243948-9317959	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv527404	chr12:9250601-9435244	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9243000-9274800	Weak transcription	Small Intestine	intestine
2	chr12:9262800-9289000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr12:9264800-9270200	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr12:9266200-9270800	Active TSS	Stomach Smooth Muscle	stomach
5	chr12:9266200-9274800	Weak transcription	Gastric	stomach
6	chr12:9266400-9270800	Active TSS	Aorta	Aorta
7	chr12:9267800-9270200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr12:9267800-9272200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr12:9268000-9270200	Enhancers	Fetal Heart	heart
10	chr12:9268200-9271800	Enhancers	HMEC	breast
11	chr12:9268200-9272200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr12:9268400-9270200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr12:9268400-9270400	Enhancers	Primary hematopoietic stem cells	blood
14	chr12:9268400-9270600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr12:9268400-9270800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr12:9268400-9271000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr12:9268400-9271800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr12:9268400-9274400	Weak transcription	Fetal Intestine Large	intestine
19	chr12:9268600-9271000	Enhancers	Primary B cells from cord blood	blood
20	chr12:9268800-9270400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:9268800-9271000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr12:9268800-9271000	Weak transcription	Fetal Thymus	thymus
23	chr12:9268800-9271600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr12:9269000-9270200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr12:9269000-9270200	Flanking Active TSS	Rectal Smooth Muscle	rectum
26	chr12:9269000-9270400	Flanking Active TSS	Fetal Lung	lung
27	chr12:9269000-9270800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr12:9269000-9270800	Weak transcription	Fetal Muscle Leg	muscle
29	chr12:9269000-9271200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr12:9269000-9271600	Enhancers	NHLF	lung
31	chr12:9269000-9277400	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr12:9269000-9280400	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr12:9269000-9319200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr12:9269200-9270400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr12:9269200-9270800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr12:9269200-9270800	Weak transcription	GM12878-XiMat	blood
37	chr12:9269200-9271000	Enhancers	Liver	Liver
38	chr12:9269200-9271000	Weak transcription	HSMMtube	muscle
39	chr12:9269200-9275800	Weak transcription	Brain Angular Gyrus	brain
40	chr12:9269200-9280400	Weak transcription	Primary T cells from cord blood	blood
41	chr12:9269200-9281800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr12:9269400-9270200	Enhancers	Colonic Mucosa	Colon
43	chr12:9269400-9270600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr12:9269400-9270800	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr12:9269400-9271000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr12:9269400-9271000	Enhancers	Ovary	ovary
47	chr12:9269400-9271200	Enhancers	Psoas Muscle	Psoas
48	chr12:9269400-9273400	Enhancers	Adipose Nuclei	Adipose
49	chr12:9269400-9274800	Weak transcription	Brain Substantia Nigra	brain
50	chr12:9269400-9276000	Weak transcription	Brain Cingulate Gyrus	brain

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