Variant report

Variant	rs79597379
Chromosome Location	chr6:121757028-121757029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3429176	chr6:121756880-121768144	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121752000-121757400	Weak transcription	Brain Angular Gyrus	brain
2	chr6:121752200-121757400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:121755600-121760000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:121756000-121758800	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:121756000-121760400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:121756000-121760800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:121756000-121761600	Active TSS	H1 Cell Line	embryonic stem cell
8	chr6:121756200-121758600	Active TSS	Brain Anterior Caudate	brain
9	chr6:121756200-121761600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr6:121756200-121763600	Active TSS	Aorta	Aorta
11	chr6:121756200-121764200	Active TSS	Right Atrium	heart
12	chr6:121756400-121757600	Active TSS	Brain Hippocampus Middle	brain
13	chr6:121756400-121758200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:121756400-121759200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:121756400-121759400	Active TSS	Adipose Nuclei	Adipose
16	chr6:121756400-121760400	Active TSS	A549	lung
17	chr6:121756400-121760600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:121756400-121760800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:121756400-121762400	Active TSS	Left Ventricle	heart
20	chr6:121756600-121757800	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr6:121756600-121757800	Active TSS	Fetal Muscle Trunk	muscle
22	chr6:121756600-121757800	Active TSS	Fetal Muscle Leg	muscle
23	chr6:121756600-121757800	Enhancers	Small Intestine	intestine
24	chr6:121756600-121758000	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr6:121756600-121758200	Active TSS	Psoas Muscle	Psoas
26	chr6:121756600-121758200	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
27	chr6:121756600-121758800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:121756600-121759000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:121756600-121759000	Active TSS	Osteobl	bone
30	chr6:121756600-121759200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:121756600-121759200	Active TSS	Fetal Kidney	kidney
32	chr6:121756600-121759200	Active TSS	HUVEC	blood vessel
33	chr6:121756600-121759400	Active TSS	Muscle Satellite Cultured Cells	--
34	chr6:121756600-121759400	Active TSS	Fetal Intestine Large	intestine
35	chr6:121756600-121759400	Active TSS	Fetal Intestine Small	intestine
36	chr6:121756600-121759400	Active TSS	Fetal Lung	lung
37	chr6:121756600-121759400	Active TSS	HSMM	muscle
38	chr6:121756600-121759600	Active TSS	Brain Germinal Matrix	brain
39	chr6:121756600-121759800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:121756600-121759800	Active TSS	Placenta Amnion	Placenta Amnion
41	chr6:121756600-121760200	Active TSS	NH-A	brain
42	chr6:121756600-121760600	Active TSS	HUES48 Cell Line	embryonic stem cell
43	chr6:121756600-121760600	Active TSS	HUES64 Cell Line	embryonic stem cell
44	chr6:121756600-121760800	Active TSS	NHDF-Ad	bronchial
45	chr6:121756600-121761000	Active TSS	iPS-15b Cell Line	embryonic stem cell
46	chr6:121756600-121761200	Active TSS	iPS-18 Cell Line	embryonic stem cell
47	chr6:121756600-121761400	Active TSS	H9 Cell Line	embryonic stem cell
48	chr6:121756600-121761400	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr6:121756600-121761600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:121756600-121761600	Active TSS	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links