Variant report

Variant	rs7959868
Chromosome Location	chr12:51075916-51075917
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51074554..51076965-chr12:51096673..51099522,2	MCF-7	breast:
2	chr12:51070223..51073044-chr12:51074608..51077031,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11836763	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11838333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58366731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60760540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73296222	1.00[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51028400-51092400	Weak transcription	Gastric	stomach
2	chr12:51041800-51091400	Weak transcription	Pancreas	Pancrea
3	chr12:51049200-51108600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:51053000-51086200	Weak transcription	Psoas Muscle	Psoas
5	chr12:51053200-51092400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr12:51053800-51089200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr12:51056400-51079200	Weak transcription	HSMM	muscle
8	chr12:51056400-51079600	Weak transcription	Fetal Kidney	kidney
9	chr12:51056600-51079400	Weak transcription	Fetal Heart	heart
10	chr12:51057000-51089600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr12:51058600-51089000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr12:51059400-51089600	Weak transcription	Small Intestine	intestine
13	chr12:51060000-51101200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr12:51060200-51108200	Weak transcription	Stomach Mucosa	stomach
15	chr12:51061200-51080200	Weak transcription	Right Ventricle	heart
16	chr12:51062200-51080400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr12:51062600-51091800	Strong transcription	Liver	Liver
18	chr12:51063000-51079600	Weak transcription	Brain Angular Gyrus	brain
19	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr12:51063600-51138800	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr12:51063800-51079800	Weak transcription	NHLF	lung
23	chr12:51063800-51085600	Strong transcription	Primary T cells from cord blood	blood
24	chr12:51064000-51109800	Strong transcription	Primary B cells from peripheral blood	blood
25	chr12:51064000-51127400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr12:51064600-51078800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr12:51064800-51078600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr12:51064800-51090000	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr12:51064800-51095800	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr12:51065200-51079400	Weak transcription	Aorta	Aorta
31	chr12:51065200-51081800	Weak transcription	Spleen	Spleen
32	chr12:51065800-51076800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr12:51066200-51080000	Weak transcription	Colon Smooth Muscle	Colon
34	chr12:51067200-51082600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr12:51067200-51084600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr12:51067200-51085400	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr12:51067400-51076400	Strong transcription	HepG2	liver
38	chr12:51067400-51078400	Strong transcription	Dnd41	blood
39	chr12:51067400-51085400	Strong transcription	Primary B cells from cord blood	blood
40	chr12:51067400-51106200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr12:51067400-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr12:51067400-51143600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr12:51067600-51080400	Weak transcription	Esophagus	oesophagus
44	chr12:51067600-51142200	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr12:51068000-51077000	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr12:51068200-51078000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr12:51068200-51078000	Strong transcription	GM12878-XiMat	blood
48	chr12:51068200-51078600	Strong transcription	Primary hematopoietic stem cells	blood
49	chr12:51068200-51095200	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr12:51068200-51106200	Strong transcription	Fetal Thymus	thymus

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