Variant report

Variant	rs7959916
Chromosome Location	chr12:47213868-47213869
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10748455	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10785645	0.81[AMR][1000 genomes]
rs11183626	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2465589	0.81[AMR][1000 genomes]
rs2465592	0.82[AMR][1000 genomes]
rs2465603	0.82[AMR][1000 genomes]
rs2465631	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2715785	0.82[AMR][1000 genomes]
rs4323984	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4340151	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4497488	0.82[EUR][1000 genomes]
rs4516050	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4533116	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4569081	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4627160	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7489259	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7955552	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7974393	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049525	chr12:46721742-47264172	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
2	nsv541486	chr12:46721742-47264172	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
3	esv1845143	chr12:47051076-47431496	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47209600-47217600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr12:47210000-47216000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr12:47211600-47219400	Weak transcription	Psoas Muscle	Psoas
4	chr12:47213200-47216800	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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