Variant report

Variant	rs7960618
Chromosome Location	chr12:57276639-57276640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10876941	0.82[EUR][1000 genomes]
rs10876943	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11172033	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1846398	0.83[ASN][1000 genomes]
rs2888106	0.87[ASN][1000 genomes]
rs2888107	0.87[ASN][1000 genomes]
rs2888108	0.87[ASN][1000 genomes]
rs4254104	0.82[EUR][1000 genomes]
rs4472974	0.83[EUR][1000 genomes]
rs4477473	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4759036	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4759041	0.87[ASN][1000 genomes]
rs55812315	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56023460	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61939604	0.87[ASN][1000 genomes]
rs7955918	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7956391	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7959253	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7959654	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7959725	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7960137	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7961602	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7967940	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7972591	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7979655	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9668259	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57274600-57280000	Weak transcription	Liver	Liver
2	chr12:57274800-57278200	Weak transcription	Osteobl	bone
3	chr12:57275000-57278000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:57275200-57278000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:57275200-57278200	Weak transcription	HSMMtube	muscle
6	chr12:57275400-57278000	Weak transcription	HSMM	muscle
7	chr12:57275400-57278200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr12:57275600-57278000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr12:57275600-57291200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links