Variant report

Variant	rs7960674
Chromosome Location	chr12:123089209-123089210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:123084374..123086999-chr12:123088019..123089607,2	MCF-7	breast:
2	chr12:123081134..123084093-chr12:123088204..123090848,2	MCF-7	breast:
3	chr12:123087780..123089364-chr12:123237080..123239227,2	K562	blood:

Variant related genes	Relation type
ENSG00000184445	Chromatin interaction
ENSG00000139726	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55817227	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55935830	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56019922	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56990369	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57142071	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57766838	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58276954	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60586933	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61062446	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61275910	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61585633	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6489161	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7134209	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7297776	0.85[AFR][1000 genomes]
rs7307052	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7310898	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7972727	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7973067	1.00[ASW][hapmap];0.85[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899570	chr12:122985057-123089209	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	93 gene(s)	inside rSNPs	diseases
2	nsv1041677	chr12:122991478-123114125	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	64 gene(s)	inside rSNPs	diseases
3	nsv1054458	chr12:123045662-123133545	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv2761772	chr12:123045674-123115508	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123012400-123114000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:123012400-123117000	Weak transcription	Pancreas	Pancrea
3	chr12:123012400-123121200	Weak transcription	Aorta	Aorta
4	chr12:123012600-123095600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:123012800-123097400	Weak transcription	Brain Angular Gyrus	brain
6	chr12:123012800-123109200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr12:123013000-123109200	Weak transcription	Colon Smooth Muscle	Colon
8	chr12:123013200-123103000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr12:123013200-123112400	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr12:123013400-123107400	Weak transcription	Fetal Heart	heart
11	chr12:123013400-123120600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr12:123015600-123115000	Strong transcription	Dnd41	blood
13	chr12:123022600-123113800	Weak transcription	Colonic Mucosa	Colon
14	chr12:123029200-123107600	Weak transcription	Brain Hippocampus Middle	brain
15	chr12:123032600-123095400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr12:123037200-123113000	Weak transcription	Brain Anterior Caudate	brain
17	chr12:123037600-123095400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr12:123037800-123100600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr12:123038400-123120000	Weak transcription	Small Intestine	intestine
20	chr12:123042600-123107200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr12:123043800-123121800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:123050800-123112600	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr12:123050800-123115200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr12:123058600-123110200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr12:123059400-123119000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr12:123060200-123113000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr12:123067200-123094200	Weak transcription	Fetal Kidney	kidney
28	chr12:123067400-123095600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr12:123067600-123090000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr12:123068000-123095400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr12:123069600-123099400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr12:123071200-123095400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr12:123072600-123095400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr12:123076000-123094000	Weak transcription	Osteobl	bone
35	chr12:123076200-123089400	Weak transcription	NHLF	lung
36	chr12:123076400-123089400	Weak transcription	Liver	Liver
37	chr12:123076400-123089600	Weak transcription	Fetal Brain Female	brain
38	chr12:123076600-123094200	Weak transcription	Primary B cells from cord blood	blood
39	chr12:123076600-123094200	Weak transcription	Adipose Nuclei	Adipose
40	chr12:123076600-123097200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr12:123077000-123089400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr12:123077000-123106400	Weak transcription	Right Ventricle	heart
43	chr12:123077400-123094000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr12:123077400-123137600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr12:123077600-123094400	Weak transcription	Spleen	Spleen
46	chr12:123077600-123095400	Weak transcription	Gastric	stomach
47	chr12:123077600-123098000	Weak transcription	Lung	lung
48	chr12:123077600-123115000	Weak transcription	Esophagus	oesophagus
49	chr12:123077600-123128200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr12:123078000-123098200	Weak transcription	Ovary	ovary

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