Variant report

Variant	rs7961094
Chromosome Location	chr12:11912367-11912368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2723827	0.83[GIH][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2723828	0.82[EUR][1000 genomes]
rs2723830	0.83[GIH][hapmap];0.80[MEX][hapmap]
rs3741429	0.87[EUR][1000 genomes]
rs3782140	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6488451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7967177	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870039	chr12:11800363-11996598	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	nsv1053609	chr12:11898099-11933906	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11893200-11915000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr12:11895000-11912600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr12:11895400-11914400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr12:11900600-11915000	Weak transcription	NHEK	skin
5	chr12:11904000-11918000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr12:11904200-11913000	Strong transcription	Dnd41	blood
7	chr12:11905800-11918400	Weak transcription	Fetal Brain Male	brain
8	chr12:11906400-11918600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr12:11906800-11915000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr12:11906800-11915000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr12:11907000-11917200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr12:11907200-11914400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr12:11907600-11918200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr12:11907800-11915000	Weak transcription	HMEC	breast
15	chr12:11908000-11912600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr12:11908000-11913000	Enhancers	Fetal Heart	heart
17	chr12:11908000-11918800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr12:11908200-11918800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:11908400-11912600	Enhancers	Duodenum Mucosa	Duodenum
20	chr12:11908400-11913400	Genic enhancers	Primary hematopoietic stem cells	blood
21	chr12:11908600-11915000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr12:11908600-11931800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr12:11908800-11912600	Enhancers	Fetal Intestine Large	intestine
24	chr12:11909200-11914600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr12:11909200-11915000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr12:11909200-11915800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr12:11909200-11919400	Weak transcription	Liver	Liver
28	chr12:11909400-11913200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr12:11909400-11914800	Weak transcription	HSMM	muscle
30	chr12:11909400-11915200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr12:11909400-11915400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr12:11909400-11915600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr12:11909400-11915800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr12:11909400-11916600	Weak transcription	NHDF-Ad	bronchial
35	chr12:11909600-11915000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr12:11909600-11915200	Weak transcription	Osteobl	bone
37	chr12:11909600-11932400	Genic enhancers	Fetal Thymus	thymus
38	chr12:11909800-11914800	Weak transcription	A549	lung
39	chr12:11909800-11919000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr12:11910400-11912400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr12:11910400-11912400	Enhancers	Fetal Muscle Trunk	muscle
42	chr12:11910400-11912400	Enhancers	Small Intestine	intestine
43	chr12:11910400-11912800	Enhancers	Left Ventricle	heart
44	chr12:11910400-11912800	Enhancers	Right Atrium	heart
45	chr12:11910600-11912400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr12:11910600-11912400	Enhancers	Brain Hippocampus Middle	brain
47	chr12:11910600-11912800	Enhancers	Right Ventricle	heart
48	chr12:11910600-11913000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr12:11910600-11913400	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr12:11910600-11916800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links