Variant report

Variant	rs7961226
Chromosome Location	chr12:31800914-31800915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10743762	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs10843989	1.00[CEU][hapmap]
rs11551368	0.86[AMR][1000 genomes]
rs11611575	0.88[CHB][hapmap]
rs4931535	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041877	chr12:31009451-31809254	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv541440	chr12:31009451-31809254	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	esv2760267	chr12:31626732-31909908	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv832365	chr12:31642811-31808532	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1043010	chr12:31798446-32143151	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv541446	chr12:31798446-32143151	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:31783400-31803000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr12:31783400-31803000	Weak transcription	Fetal Intestine Small	intestine
3	chr12:31789600-31803000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr12:31789800-31801200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr12:31789800-31803000	Weak transcription	Adipose Nuclei	Adipose
6	chr12:31797600-31803000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:31798200-31802200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:31798800-31803200	Weak transcription	HepG2	liver
9	chr12:31799000-31803000	Weak transcription	Pancreas	Pancrea
10	chr12:31799200-31803400	Weak transcription	A549	lung
11	chr12:31799200-31811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr12:31799400-31803600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr12:31799600-31804400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr12:31800200-31801600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr12:31800200-31803600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr12:31800200-31811600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr12:31800400-31801200	Enhancers	Hela-S3	cervix
18	chr12:31800400-31802600	Weak transcription	Placenta	Placenta
19	chr12:31800400-31803200	Weak transcription	Ovary	ovary
20	chr12:31800400-31803600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:31800400-31803800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr12:31800400-31803800	Weak transcription	Fetal Kidney	kidney
23	chr12:31800400-31805800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr12:31800400-31805800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr12:31800400-31811400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr12:31800600-31803600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr12:31800600-31805600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr12:31800600-31805600	Weak transcription	Primary B cells from peripheral blood	blood
29	chr12:31800600-31805600	Weak transcription	HMEC	breast
30	chr12:31800600-31805600	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr12:31800600-31805800	Weak transcription	Primary B cells from cord blood	blood
32	chr12:31800600-31805800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr12:31800600-31805800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr12:31800600-31805800	Weak transcription	NHEK	skin
35	chr12:31800800-31802800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr12:31800800-31805800	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links