Variant report

Variant	rs7961355
Chromosome Location	chr12:9114631-9114632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9103173..9107180-chr12:9112850..9116183,4	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10129061	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10400516	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10743568	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10771238	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11048190	0.83[ASN][1000 genomes]
rs11048195	0.83[ASN][1000 genomes]
rs11048264	0.83[ASN][1000 genomes]
rs11048337	0.84[ASN][1000 genomes]
rs11048338	0.84[ASN][1000 genomes]
rs11048344	0.84[ASN][1000 genomes]
rs11048345	0.84[ASN][1000 genomes]
rs1121401	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11614202	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12423746	0.84[ASN][1000 genomes]
rs12423817	0.84[ASN][1000 genomes]
rs12424026	0.84[ASN][1000 genomes]
rs12812913	0.84[ASN][1000 genomes]
rs12821842	0.84[ASN][1000 genomes]
rs12823100	0.84[ASN][1000 genomes]
rs12833375	0.84[ASN][1000 genomes]
rs1805248	0.87[ASN][1000 genomes]
rs1805724	0.83[ASN][1000 genomes]
rs1805725	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1805727	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1805735	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1805754	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2041624	0.84[ASN][1000 genomes]
rs2041625	0.84[ASN][1000 genomes]
rs2377671	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2377672	0.83[ASN][1000 genomes]
rs2377673	0.84[ASN][1000 genomes]
rs2377674	0.84[ASN][1000 genomes]
rs2377676	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34798934	0.84[ASN][1000 genomes]
rs4309200	0.84[ASN][1000 genomes]
rs4639983	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4883203	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7132930	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7300767	0.84[ASN][1000 genomes]
rs7301381	0.82[ASN][1000 genomes]
rs7957321	0.84[ASN][1000 genomes]
rs7974486	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs887782	0.91[EUR][1000 genomes]
rs933462	0.83[ASN][1000 genomes]
rs987917	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832327	chr12:9081779-9246220	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv819596	chr12:9113514-9141537	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7961355	M6PR	cis	lung	GTEx

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9103400-9116400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:9106600-9116000	Weak transcription	Left Ventricle	heart
3	chr12:9108600-9115200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr12:9109000-9115600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr12:9109000-9121600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr12:9109600-9114800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:9111000-9115600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr12:9112200-9116800	Weak transcription	Pancreas	Pancrea
9	chr12:9113400-9115000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr12:9113600-9115000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr12:9113600-9116000	Weak transcription	Thymus	Thymus
12	chr12:9113800-9115600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr12:9114000-9114800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr12:9114200-9114800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr12:9114600-9115400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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