The 2.0 version of rSNPBase

Variant report

Variant rs7961838
Chromosome Location chr12:32955070-32955071
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:32939200-32955200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
2 chr12:32940800-32961800 Weak transcription Colonic Mucosa Colon
3 chr12:32941800-33033400 Weak transcription Duodenum Smooth Muscle Duodenum
4 chr12:32942000-32957400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
5 chr12:32943800-33026800 Weak transcription Fetal Kidney kidney
6 chr12:32944200-32989400 Weak transcription Hela-S3 cervix
7 chr12:32945800-32972400 Weak transcription Pancreatic Islets Pancreatic Islet
8 chr12:32946000-32973600 Weak transcription H1 Cell Line embryonic stem cell
9 chr12:32946200-32961400 Weak transcription HepG2 liver
10 chr12:32946600-32967200 Weak transcription Stomach Mucosa stomach
11 chr12:32948000-32957600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
12 chr12:32949200-32955200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr12:32949200-32961400 Weak transcription Fetal Stomach stomach
14 chr12:32949200-32961400 Weak transcription Pancreas Pancrea
15 chr12:32949200-32961800 Weak transcription Gastric stomach
16 chr12:32949200-32975200 Weak transcription Stomach Smooth Muscle stomach
17 chr12:32949200-32987000 Weak transcription H9 Cell Line embryonic stem cell
18 chr12:32949200-33007800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
19 chr12:32951400-32955400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr12:32951400-32955400 Weak transcription Fetal Intestine Small intestine
21 chr12:32952400-32955600 Strong transcription Duodenum Mucosa Duodenum
22 chr12:32952400-32955600 Strong transcription Rectal Mucosa Donor 31 rectum
23 chr12:32952600-32955400 Strong transcription HUES64 Cell Line embryonic stem cell
24 chr12:32952600-32955600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr12:32953000-32955400 Strong transcription Liver Liver
26 chr12:32953000-32955600 Strong transcription Placenta Placenta
27 chr12:32953000-32955600 Strong transcription Rectal Mucosa Donor 29 rectum
28 chr12:32953600-32956400 Weak transcription ES-I3 Cell Line embryonic stem cell
29 chr12:32953600-32960800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
30 chr12:32953600-32961600 Weak transcription Placenta Amnion Placenta Amnion
31 chr12:32953800-32957400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
32 chr12:32953800-32961400 Weak transcription Sigmoid Colon Sigmoid Colon
33 chr12:32953800-32961600 Weak transcription Fetal Intestine Large intestine
34 chr12:32954200-32963400 Weak transcription HMEC breast
35 chr12:32954400-32958200 Weak transcription HUES6 Cell Line embryonic stem cell
36 chr12:32954400-32958600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr12:32954400-32961800 Weak transcription Left Ventricle heart
38 chr12:32954400-32962000 Weak transcription Breast Myoepithelial Primary Cells Breast
39 chr12:32954400-32962000 Weak transcription Right Ventricle heart
40 chr12:32954400-32968800 Weak transcription Primary neutrophils fromperipheralblood blood
41 chr12:32954600-32955600 Strong transcription HUES48 Cell Line embryonic stem cell
42 chr12:32955000-32955400 Enhancers Fetal Lung lung
43 chr12:32955000-32957200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr12:32955000-32961400 Weak transcription Fetal Heart heart
45 chr12:32955000-32961400 Weak transcription NHEK skin

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Last update: Aug 31, 2015