Variant report

Variant	rs79618637
Chromosome Location	chr15:74917413-74917414
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:74916630-74917602	PFSK-1	brain:	n/a	n/a
2	POLR2A	chr15:74906714-74928682	K562	blood:	n/a	n/a
3	POLR2A	chr15:74915025-74921912	K562	blood:	n/a	n/a
4	POLR2A	chr15:74917344-74917511	GM12878	blood:	n/a	n/a
5	POLR2A	chr15:74917362-74919092	HepG2	liver:	n/a	n/a
6	POLR2A	chr15:74916512-74918002	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr15:74916327-74921769	A549	lung:	n/a	n/a
8	POLR2A	chr15:74915016-74925636	GM12878	blood:	n/a	n/a
9	POLR2A	chr15:74916929-74917598	K562	blood:	n/a	n/a
10	POLR2A	chr15:74912457-74921873	HepG2	liver:	n/a	n/a
11	POLR2A	chr15:74917322-74923933	Hela-S3	cervix:	n/a	n/a
12	POLR2A	chr15:74914837-74924670	GM12878	blood:	n/a	n/a
13	POLR2A	chr15:74917345-74925986	SK-N-MC	brain:	n/a	n/a
14	POLR2A	chr15:74916156-74919289	K562	blood:	n/a	n/a
15	POLR2A	chr15:74917365-74917782	K562	blood:	n/a	n/a
16	POLR2A	chr15:74910294-74921892	Hela-S3	cervix:	n/a	n/a
17	POLR2A	chr15:74917380-74917562	K562	blood:	n/a	n/a
18	POLR2A	chr15:74917336-74917527	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74915721..74919302-chr15:75074662..75077539,3	MCF-7	breast:

Variant related genes	Relation type
CLK3	TF binding region
ENSG00000103653	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	esv1812223	chr15:74869438-74948063	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	esv1814078	chr15:74884447-74948063	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv457204	chr15:74885091-74948063	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv569991	chr15:74885091-74948063	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	nsv542434	chr15:74885329-74929552	Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv1047943	chr15:74885329-74940857	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
10	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
11	esv19858	chr15:74911304-74925497	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
12	nsv527730	chr15:74915888-74920532	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74909000-74927000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:74910000-74917800	Strong transcription	Primary B cells from cord blood	blood
3	chr15:74910000-74931200	Strong transcription	NHLF	lung
4	chr15:74910000-74931600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:74910400-74925600	Strong transcription	Muscle Satellite Cultured Cells	--
6	chr15:74910400-74931800	Strong transcription	K562	blood
7	chr15:74910400-74933400	Strong transcription	Rectal Smooth Muscle	rectum
8	chr15:74910600-74936400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr15:74910800-74918600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:74910800-74922600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr15:74910800-74933200	Strong transcription	Fetal Intestine Large	intestine
12	chr15:74910800-74933800	Strong transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:74910800-74934400	Strong transcription	Thymus	Thymus
14	chr15:74911000-74918200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr15:74911000-74918600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:74911000-74927600	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr15:74911000-74934200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:74911000-74934200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:74911000-74938000	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr15:74911200-74926400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr15:74911400-74918600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
22	chr15:74911400-74929600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr15:74911400-74929800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:74911400-74934800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:74911400-74936800	Strong transcription	Dnd41	blood
26	chr15:74911400-74937400	Strong transcription	Primary T cells from cord blood	blood
27	chr15:74911600-74919400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr15:74911600-74920400	Strong transcription	Osteobl	bone
29	chr15:74911600-74921200	Strong transcription	Fetal Kidney	kidney
30	chr15:74911600-74921600	Strong transcription	HSMM	muscle
31	chr15:74911600-74921800	Strong transcription	HUVEC	blood vessel
32	chr15:74911600-74922600	Strong transcription	NHDF-Ad	bronchial
33	chr15:74911600-74925400	Strong transcription	H9 Cell Line	embryonic stem cell
34	chr15:74911600-74926400	Strong transcription	Aorta	Aorta
35	chr15:74911600-74927400	Strong transcription	Placenta Amnion	Placenta Amnion
36	chr15:74911600-74928200	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr15:74911600-74928200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr15:74911600-74933000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr15:74911600-74933800	Strong transcription	Fetal Lung	lung
40	chr15:74911800-74918400	Strong transcription	Primary hematopoietic stem cells	blood
41	chr15:74911800-74923200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr15:74911800-74933200	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr15:74911800-74934200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:74912000-74921800	Strong transcription	NH-A	brain
45	chr15:74912400-74921400	Strong transcription	Pancreatic Islets	Pancreatic Islet
46	chr15:74913400-74918400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr15:74913600-74918400	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr15:74913600-74918600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
49	chr15:74913600-74919400	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr15:74913600-74919800	Strong transcription	Placenta	Placenta

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