Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1016334	0.87[EUR][1000 genomes]
rs1019344	0.86[EUR][1000 genomes]
rs1019345	0.86[EUR][1000 genomes]
rs1030071	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10841945	0.87[EUR][1000 genomes]
rs10841946	0.86[EUR][1000 genomes]
rs10841947	0.86[EUR][1000 genomes]
rs10841948	0.86[EUR][1000 genomes]
rs10841949	0.85[EUR][1000 genomes]
rs11046310	0.85[EUR][1000 genomes]
rs12322331	0.86[EUR][1000 genomes]
rs12809302	0.87[EUR][1000 genomes]
rs12809814	0.88[EUR][1000 genomes]
rs2080556	0.88[EUR][1000 genomes]
rs2111355	0.88[EUR][1000 genomes]
rs2111356	0.88[EUR][1000 genomes]
rs2418043	0.88[EUR][1000 genomes]
rs2418044	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2909075	0.86[EUR][1000 genomes]
rs7298816	0.85[EUR][1000 genomes]
rs7487653	0.86[EUR][1000 genomes]
rs7955550	0.88[EUR][1000 genomes]
rs7963642	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs929672	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758298	chr12:22140834-22339299	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2759883	chr12:22140834-22736907	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:22299000-22300400	Enhancers	Primary T cells fromperipheralblood	blood
2	chr12:22299200-22300200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr12:22299200-22300200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr12:22299200-22300400	Enhancers	Primary T cells from cord blood	blood
5	chr12:22299200-22300400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:22299200-22300400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr12:22299200-22300400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr12:22299200-22300600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr12:22299200-22300800	Enhancers	Primary B cells from peripheral blood	blood
10	chr12:22299200-22300800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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