Variant report

Variant	rs7963457
Chromosome Location	chr12:29864808-29864809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs169987	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs172543	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs302374	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs433275	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59499757	0.81[AMR][1000 genomes]
rs754911	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs754912	0.82[AMR][1000 genomes]
rs7963288	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529328	chr12:29692414-30246209	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3402343	chr12:29862735-29864933	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29854400-29866000	Weak transcription	HSMMtube	muscle
2	chr12:29854400-29879000	Weak transcription	Ovary	ovary
3	chr12:29855600-29878200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr12:29855800-29891200	Weak transcription	NHLF	lung
5	chr12:29859200-29867400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr12:29862000-29867600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:29862600-29868000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr12:29863000-29867600	Weak transcription	Small Intestine	intestine
9	chr12:29863200-29866000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:29863200-29867400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr12:29863200-29868400	Enhancers	Colon Smooth Muscle	Colon
12	chr12:29863200-29878800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr12:29863400-29865000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr12:29863400-29865000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr12:29863400-29865400	Enhancers	Stomach Smooth Muscle	stomach
16	chr12:29863400-29865600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr12:29863400-29865600	Weak transcription	NHEK	skin
18	chr12:29863400-29865800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr12:29863400-29865800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr12:29863400-29865800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr12:29863400-29865800	Weak transcription	Fetal Heart	heart
22	chr12:29863400-29866000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr12:29863400-29866000	Weak transcription	Fetal Brain Male	brain
24	chr12:29863400-29866200	Weak transcription	Psoas Muscle	Psoas
25	chr12:29863400-29867000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr12:29863400-29870000	Weak transcription	Aorta	Aorta
27	chr12:29863400-29872000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr12:29863400-29878200	Weak transcription	Brain Anterior Caudate	brain
29	chr12:29863400-29878200	Weak transcription	Right Ventricle	heart
30	chr12:29863400-29878800	Weak transcription	Fetal Kidney	kidney
31	chr12:29863400-29879000	Weak transcription	Brain Angular Gyrus	brain
32	chr12:29863400-29895800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr12:29864000-29865200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr12:29864000-29865600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr12:29864000-29865800	Enhancers	Hela-S3	cervix
36	chr12:29864200-29865600	Weak transcription	HMEC	breast
37	chr12:29864200-29872400	Weak transcription	Left Ventricle	heart
38	chr12:29864200-29879400	Weak transcription	Right Atrium	heart
39	chr12:29864400-29865200	Enhancers	NHDF-Ad	bronchial
40	chr12:29864400-29867000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr12:29864400-29868600	Enhancers	Muscle Satellite Cultured Cells	--
42	chr12:29864600-29865600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr12:29864600-29865600	Weak transcription	Adipose Nuclei	Adipose
44	chr12:29864600-29865600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr12:29864600-29865800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr12:29864600-29865800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr12:29864600-29865800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr12:29864600-29866000	Weak transcription	Fetal Muscle Leg	muscle
49	chr12:29864600-29878400	Weak transcription	Rectal Smooth Muscle	rectum
50	chr12:29864600-29878600	Weak transcription	HSMM	muscle

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