Variant report

Variant	rs7964985
Chromosome Location	chr12:67909402-67909403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr12:67909373-67909793	GM12878	blood:	n/a	n/a
2	EP300	chr12:67909380-67910383	SK-N-SH	brain:	n/a	chr12:67909487-67909501

Variant related genes	Relation type
ENSG00000203585	TF binding region

rs_ID	r²[population]
rs17104263	1.00[EUR][1000 genomes]
rs2700086	1.00[EUR][1000 genomes]
rs59466267	1.00[EUR][1000 genomes]
rs60096568	1.00[EUR][1000 genomes]
rs61143607	1.00[EUR][1000 genomes]
rs7303880	1.00[EUR][1000 genomes]
rs7315364	1.00[EUR][1000 genomes]
rs73316764	1.00[EUR][1000 genomes]
rs74100346	1.00[EUR][1000 genomes]
rs74100356	1.00[EUR][1000 genomes]
rs7965842	1.00[EUR][1000 genomes]
rs7971132	1.00[EUR][1000 genomes]

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67903000-67910600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:67903200-67911000	Weak transcription	Right Atrium	heart
3	chr12:67905200-67911200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr12:67905400-67911200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr12:67905400-67911600	Enhancers	Fetal Thymus	thymus
6	chr12:67906000-67910000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr12:67908000-67910400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:67908000-67911200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr12:67908000-67911400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr12:67908000-67911400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr12:67908400-67909800	Enhancers	Fetal Intestine Large	intestine
12	chr12:67908400-67910200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr12:67908400-67911800	Enhancers	Fetal Brain Female	brain
14	chr12:67908600-67909600	Enhancers	Thymus	Thymus
15	chr12:67908600-67910600	Enhancers	Colon Smooth Muscle	Colon
16	chr12:67908600-67911200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr12:67908600-67911600	Enhancers	Fetal Brain Male	brain
18	chr12:67908800-67909600	Enhancers	Esophagus	oesophagus
19	chr12:67908800-67909600	Enhancers	Stomach Smooth Muscle	stomach
20	chr12:67908800-67909800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr12:67908800-67909800	Enhancers	Fetal Stomach	stomach
22	chr12:67908800-67910000	Enhancers	Fetal Intestine Small	intestine
23	chr12:67908800-67910000	Enhancers	Small Intestine	intestine
24	chr12:67908800-67910200	Enhancers	Primary hematopoietic stem cells	blood
25	chr12:67908800-67910200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr12:67908800-67910400	Enhancers	Fetal Muscle Leg	muscle
27	chr12:67908800-67910800	Enhancers	Gastric	stomach
28	chr12:67908800-67911000	Enhancers	Primary B cells from peripheral blood	blood
29	chr12:67908800-67911400	Enhancers	Pancreas	Pancrea
30	chr12:67908800-67911600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr12:67908800-67911800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr12:67909000-67909600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr12:67909000-67909600	Flanking Active TSS	Stomach Mucosa	stomach
34	chr12:67909000-67909800	Enhancers	Primary B cells from cord blood	blood
35	chr12:67909000-67909800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr12:67909000-67909800	Enhancers	Psoas Muscle	Psoas
37	chr12:67909000-67910000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr12:67909000-67910200	Flanking Active TSS	Dnd41	blood
39	chr12:67909000-67910400	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr12:67909000-67913000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr12:67909200-67909600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr12:67909200-67909600	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr12:67909200-67909600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
44	chr12:67909200-67909800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr12:67909200-67909800	Enhancers	Placenta	Placenta
46	chr12:67909200-67909800	Flanking Active TSS	GM12878-XiMat	blood
47	chr12:67909200-67910200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr12:67909200-67910200	Enhancers	HSMMtube	muscle
49	chr12:67909200-67911400	Enhancers	HSMM	muscle
50	chr12:67909200-67911400	Enhancers	NH-A	brain

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