Variant report

Variant	rs7965500
Chromosome Location	chr12:46674966-46674967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56818305	0.85[AFR][1000 genomes]
rs58015896	0.85[AFR][1000 genomes]
rs59268437	0.90[AFR][1000 genomes]
rs7311320	1.00[AFR][1000 genomes]
rs74081917	0.95[AFR][1000 genomes]
rs74081935	0.85[AFR][1000 genomes]
rs74081980	0.85[AFR][1000 genomes]
rs74081983	0.85[AFR][1000 genomes]
rs74081996	0.90[AFR][1000 genomes]
rs74082091	1.00[AFR][1000 genomes]
rs74082100	1.00[AFR][1000 genomes]
rs74084027	1.00[AFR][1000 genomes]
rs74084032	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832398	chr12:46611692-46825530	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	181 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:46664000-46675800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:46664200-46677400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:46665200-46677200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr12:46665400-46676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr12:46665600-46675600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr12:46666800-46676200	Weak transcription	Primary T cells from cord blood	blood
7	chr12:46674200-46675000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:46674400-46675000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr12:46674800-46675400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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