Variant report

Variant	rs7965949
Chromosome Location	chr12:31782026-31782027
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4483684	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041877	chr12:31009451-31809254	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv541440	chr12:31009451-31809254	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	esv2760267	chr12:31626732-31909908	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv832365	chr12:31642811-31808532	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:31773600-31782600	Weak transcription	A549	lung
2	chr12:31775600-31782400	Weak transcription	HSMMtube	muscle
3	chr12:31779600-31782200	Weak transcription	Fetal Intestine Small	intestine
4	chr12:31779800-31782400	Weak transcription	K562	blood
5	chr12:31780800-31782200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:31781000-31782200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:31781000-31782200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:31781000-31782400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr12:31781000-31782400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr12:31781000-31782400	Weak transcription	Adipose Nuclei	Adipose
11	chr12:31781000-31782400	Weak transcription	Left Ventricle	heart
12	chr12:31781000-31782600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:31781200-31782200	Weak transcription	Fetal Heart	heart
14	chr12:31781200-31782200	Weak transcription	Fetal Lung	lung
15	chr12:31781200-31782400	Weak transcription	Fetal Muscle Leg	muscle
16	chr12:31781200-31782400	Weak transcription	Right Ventricle	heart
17	chr12:31781400-31783000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr12:31781600-31782400	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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