Variant report

Variant	rs79659554
Chromosome Location	chr5:179215453-179215454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:179208245..179209901-chr5:179214926..179216675,2	MCF-7	breast:
2	chr5:179210097..179212795-chr5:179213653..179217175,3	MCF-7	breast:
3	chr5:179192837..179195567-chr5:179212671..179216209,3	K562	blood:
4	chr5:179213701..179215933-chr5:179218776..179220680,2	K562	blood:
5	chr5:179211965..179215539-chr5:179247804..179250502,3	K562	blood:

Variant related genes	Relation type
ENSG00000161011	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949554	chr5:178832325-179309513	Transcr. at gene 5' and 3' Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	312 gene(s)	inside rSNPs	diseases
2	nsv883270	chr5:178951106-179350387	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	312 gene(s)	inside rSNPs	diseases
3	nsv531997	chr5:179107599-179588082	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	339 gene(s)	inside rSNPs	diseases
4	nsv469579	chr5:179184831-179360191	Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
5	nsv883274	chr5:179186397-179310330	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv518964	chr5:179193598-179227286	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
7	nsv883275	chr5:179193598-179267783	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
8	nsv883276	chr5:179193598-179310330	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
9	nsv883277	chr5:179193598-179350387	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
10	nsv823361	chr5:179213324-179251243	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	173 gene(s)	inside rSNPs	diseases
11	nsv600659	chr5:179214251-179225594	Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	147 gene(s)	inside rSNPs	diseases
12	nsv600660	chr5:179214251-179231248	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	149 gene(s)	inside rSNPs	diseases
13	nsv883278	chr5:179214818-179238794	Active TSS Genic enhancers Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	154 gene(s)	inside rSNPs	diseases
14	nsv883279	chr5:179214818-179248774	Enhancers Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	173 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179202000-179221800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:179203400-179218200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:179203400-179221600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:179203600-179219600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr5:179203600-179220400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:179203600-179222000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:179204000-179221200	Weak transcription	Small Intestine	intestine
8	chr5:179205000-179218800	Weak transcription	Right Atrium	heart
9	chr5:179205200-179220600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr5:179205200-179221800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr5:179206000-179220200	Weak transcription	Ovary	ovary
12	chr5:179206400-179219200	Weak transcription	Gastric	stomach
13	chr5:179207000-179220200	Weak transcription	GM12878-XiMat	blood
14	chr5:179207200-179218600	Weak transcription	Fetal Muscle Leg	muscle
15	chr5:179207200-179218800	Weak transcription	Adipose Nuclei	Adipose
16	chr5:179207200-179220600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr5:179207400-179218600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr5:179207400-179219400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr5:179207400-179221000	Weak transcription	Brain Substantia Nigra	brain
20	chr5:179207600-179218800	Weak transcription	Fetal Lung	lung
21	chr5:179207600-179219200	Weak transcription	Colonic Mucosa	Colon
22	chr5:179207600-179219400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:179207600-179219400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr5:179207600-179220000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr5:179207600-179220200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr5:179207600-179220200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr5:179207600-179220200	Weak transcription	Pancreas	Pancrea
28	chr5:179207600-179220600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr5:179207600-179220800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr5:179207600-179221200	Weak transcription	Fetal Intestine Large	intestine
31	chr5:179207600-179222200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr5:179207600-179222600	Weak transcription	Aorta	Aorta
33	chr5:179207800-179216200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr5:179207800-179218200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr5:179207800-179219200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr5:179207800-179220200	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr5:179207800-179220200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:179207800-179220400	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr5:179207800-179220400	Weak transcription	Brain Angular Gyrus	brain
40	chr5:179207800-179220400	Weak transcription	HSMM	muscle
41	chr5:179207800-179220600	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr5:179207800-179222200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr5:179208000-179219400	Weak transcription	Primary B cells from cord blood	blood
44	chr5:179208000-179220200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr5:179208000-179220200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr5:179208000-179220400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr5:179208000-179220600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr5:179208400-179218600	Weak transcription	Placenta	Placenta
49	chr5:179209000-179220400	Weak transcription	Brain Anterior Caudate	brain
50	chr5:179209000-179220800	Weak transcription	Dnd41	blood

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