Variant report
| Variant | rs7966481 |
|---|---|
| Chromosome Location | chr12:75082820-75082821 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:74931373..74934203-chr12:75080522..75082837,2 | MCF-7 | breast: | |
| 2 | chr12:75082737..75083566-chr12:75727830..75728655,2 | MCF-7 | breast: | |
| 3 | chr12:75082582..75083563-chr12:75481520..75482214,2 | MCF-7 | breast: | |
| 4 | chr12:75082779..75083551-chr12:75899376..75900114,2 | MCF-7 | breast: | |
| 5 | chr12:75082796..75083489-chr12:75451709..75452443,2 | MCF-7 | breast: | |
| 6 | chr12:75082733..75083422-chr12:75196794..75197408,2 | MCF-7 | breast: | |
| 7 | chr12:75082770..75083374-chr12:75481266..75482191,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000253719 | Chromatin interaction |
| ENSG00000257386 | Chromatin interaction |
| ENSG00000173401 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:3)
| rs_ID | r2[population] |
|---|---|
| rs74107156 | 1.00[AMR][1000 genomes] |
| rs74107324 | 1.00[AMR][1000 genomes] |
| rs7979897 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899297 | chr12:75045728-75169675 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv899298 | chr12:75045728-75173289 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv427915 | chr12:75047293-75172692 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
