Variant report

Variant	rs7966525
Chromosome Location	chr12:31821824-31821825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:31819291..31822149-chr12:31822447..31825439,3	K562	blood:
2	chr12:31820306..31823293-chr12:31823300..31825334,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1072778	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10743763	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10771864	0.90[ASN][1000 genomes]
rs10843994	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10843998	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11051539	0.91[ASN][1000 genomes]
rs11051550	0.95[EUR][1000 genomes]
rs1115971	0.94[ASN][1000 genomes]
rs12316119	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2200232	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2374171	0.91[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2388926	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs4272863	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap]
rs4931537	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7133297	0.97[EUR][1000 genomes]
rs7295568	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs73090337	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7309916	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7953032	0.94[ASN][1000 genomes]
rs7957042	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7968792	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs7970095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7980264	0.91[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs900609	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs900610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760267	chr12:31626732-31909908	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv1043010	chr12:31798446-32143151	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv541446	chr12:31798446-32143151	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv3432694	chr12:31801467-32109828	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv898966	chr12:31810126-31944985	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:31812800-31823800	Weak transcription	Small Intestine	intestine
2	chr12:31813000-31822000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr12:31813000-31822000	Weak transcription	NH-A	brain
4	chr12:31813000-31826000	Weak transcription	Gastric	stomach
5	chr12:31813200-31822000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:31813200-31837000	Weak transcription	Fetal Brain Male	brain
7	chr12:31813400-31822000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr12:31813400-31822000	Weak transcription	Brain Anterior Caudate	brain
9	chr12:31813400-31822000	Weak transcription	Fetal Intestine Large	intestine
10	chr12:31813400-31822000	Weak transcription	Psoas Muscle	Psoas
11	chr12:31813400-31822000	Weak transcription	Right Ventricle	heart
12	chr12:31813400-31822200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr12:31813400-31822200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr12:31813400-31825200	Weak transcription	Aorta	Aorta
15	chr12:31813400-31825400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr12:31813400-31825600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr12:31813400-31826600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr12:31813400-31835200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr12:31813400-31835600	Weak transcription	Brain Angular Gyrus	brain
20	chr12:31813400-31836200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr12:31815200-31822000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr12:31815200-31840600	Weak transcription	Pancreas	Pancrea
23	chr12:31815400-31822200	Weak transcription	Lung	lung
24	chr12:31815800-31826200	Weak transcription	Brain Substantia Nigra	brain
25	chr12:31816000-31822000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr12:31816400-31822200	Weak transcription	Left Ventricle	heart
27	chr12:31817200-31822200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr12:31817400-31850400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr12:31819400-31822000	Weak transcription	Primary B cells from cord blood	blood
30	chr12:31819400-31822200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr12:31821000-31822000	Weak transcription	Stomach Smooth Muscle	stomach
32	chr12:31821000-31822000	Weak transcription	Hela-S3	cervix
33	chr12:31821600-31822600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr12:31821600-31822600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
35	chr12:31821600-31822600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr12:31821600-31823200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
37	chr12:31821600-31823800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
38	chr12:31821800-31822000	Weak transcription	Ovary	ovary
39	chr12:31821800-31822200	ZNF genes & repeats	Colon Smooth Muscle	Colon
40	chr12:31821800-31822400	ZNF genes & repeats	Fetal Kidney	kidney
41	chr12:31821800-31822400	ZNF genes & repeats	Fetal Lung	lung
42	chr12:31821800-31822600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr12:31821800-31822600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr12:31821800-31822600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
45	chr12:31821800-31822600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr12:31821800-31822600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr12:31821800-31822600	ZNF genes & repeats	Adipose Nuclei	Adipose
48	chr12:31821800-31822600	ZNF genes & repeats	Liver	Liver
49	chr12:31821800-31822600	ZNF genes & repeats	Brain Hippocampus Middle	brain
50	chr12:31821800-31822600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

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