Variant report

Variant	rs7966635
Chromosome Location	chr12:9946029-9946030
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:9899277..9916007-chr12:9939474..9959569,108	K562	blood:
2	chr12:9916372..9918378-chr12:9944960..9947867,2	K562	blood:
3	chr12:9939384..9941433-chr12:9943747..9946040,4	K562	blood:
4	chr12:9901100..9927208-chr12:9932356..9954328,123	K562	blood:

Variant related genes	Relation type
ENSG00000110848	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10772147	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053116	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12301753	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2110448	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2401400	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2401401	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4763931	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4763932	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4763935	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488204	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7975116	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3377937	chr12:9938734-9962518	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9941000-9946200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr12:9941000-9950200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:9944600-9947800	Enhancers	Hela-S3	cervix
4	chr12:9945000-9946200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:9945000-9946400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr12:9945000-9948000	Enhancers	HUVEC	blood vessel
7	chr12:9945200-9946200	Enhancers	Primary B cells from cord blood	blood
8	chr12:9945200-9946400	Enhancers	Primary T cells from cord blood	blood
9	chr12:9945200-9946400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr12:9945200-9946400	Enhancers	K562	blood
11	chr12:9945200-9946600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr12:9945200-9946800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr12:9945200-9947400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr12:9945200-9948600	Enhancers	Primary B cells from peripheral blood	blood
15	chr12:9945400-9946400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr12:9945400-9946400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr12:9945400-9946400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr12:9945400-9947000	Enhancers	Primary hematopoietic stem cells	blood
19	chr12:9945400-9947000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr12:9945400-9947000	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr12:9945600-9946600	Enhancers	NH-A	brain
22	chr12:9945600-9947800	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr12:9945600-9947800	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr12:9945600-9951000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr12:9945800-9946200	Enhancers	Placenta Amnion	Placenta Amnion
26	chr12:9945800-9946400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr12:9945800-9946400	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr12:9945800-9946400	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr12:9945800-9949000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr12:9946000-9946600	Enhancers	Muscle Satellite Cultured Cells	--

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