Variant report

Variant	rs7967178
Chromosome Location	chr12:4524727-4524728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7968988	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv557123	chr12:4436632-4736569	Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv898616	chr12:4490059-4564613	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv585	chr12:4514249-4559242	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4523200-4526600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:4523800-4525000	Enhancers	Fetal Thymus	thymus
3	chr12:4524000-4524800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr12:4524000-4524800	Enhancers	Left Ventricle	heart
5	chr12:4524000-4524800	Enhancers	Right Atrium	heart
6	chr12:4524000-4524800	Enhancers	Thymus	Thymus
7	chr12:4524000-4524800	Enhancers	HSMM	muscle
8	chr12:4524000-4524800	Enhancers	K562	blood
9	chr12:4524000-4525000	Flanking Active TSS	Dnd41	blood
10	chr12:4524000-4525200	Enhancers	Brain Germinal Matrix	brain
11	chr12:4524000-4525200	Enhancers	Fetal Intestine Large	intestine
12	chr12:4524000-4525200	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr12:4524000-4525600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr12:4524200-4524800	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr12:4524200-4524800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr12:4524200-4524800	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr12:4524200-4524800	Bivalent Enhancer	Adipose Nuclei	Adipose
18	chr12:4524200-4524800	Flanking Active TSS	Duodenum Mucosa	Duodenum
19	chr12:4524200-4524800	Enhancers	Right Ventricle	heart
20	chr12:4524200-4525000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr12:4524200-4525000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
22	chr12:4524200-4525000	Enhancers	Stomach Smooth Muscle	stomach
23	chr12:4524200-4525200	Enhancers	Fetal Heart	heart
24	chr12:4524200-4527200	Enhancers	Rectal Smooth Muscle	rectum
25	chr12:4524400-4524800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr12:4524600-4524800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr12:4524600-4524800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr12:4524600-4524800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr12:4524600-4524800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr12:4524600-4524800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr12:4524600-4524800	Flanking Active TSS	Fetal Brain Female	brain
32	chr12:4524600-4524800	Bivalent Enhancer	Fetal Lung	lung
33	chr12:4524600-4525000	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr12:4524600-4525000	Bivalent Enhancer	Stomach Mucosa	stomach
35	chr12:4524600-4525000	Enhancers	HSMMtube	muscle
36	chr12:4524600-4525600	Enhancers	Fetal Brain Male	brain
37	chr12:4524600-4525800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr12:4524600-4527400	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr12:4524600-4532000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links