Variant report

Variant	rs7967407
Chromosome Location	chr12:120237305-120237306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120235897..120238029-chr12:120238988..120240505,2	K562	blood:
2	chr12:120235993..120238299-chr12:120240809..120242779,2	MCF-7	breast:
3	chr12:120235109..120238740-chr12:120239005..120242553,5	K562	blood:
4	chr12:120231934..120234930-chr12:120235368..120237886,2	K562	blood:
5	chr12:120236722..120239013-chr12:120239734..120241519,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122966	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11064946	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs12303871	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12307282	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12319537	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12319916	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12320276	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280590	1.00[CEU][hapmap]
rs280591	1.00[CEU][hapmap]
rs55906258	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56233820	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56903823	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57243313	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57487797	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57626094	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57908788	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58111169	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58893111	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59442639	1.00[ASN][1000 genomes]
rs7304029	1.00[CEU][hapmap]
rs73420604	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73420615	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120190000-120244800	Weak transcription	Primary B cells from cord blood	blood
2	chr12:120199200-120241000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr12:120209400-120293600	Weak transcription	Primary T cells from cord blood	blood
4	chr12:120210000-120239200	Weak transcription	Fetal Brain Female	brain
5	chr12:120214600-120241000	Weak transcription	Fetal Intestine Large	intestine
6	chr12:120218800-120241000	Weak transcription	Fetal Kidney	kidney
7	chr12:120218800-120241200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr12:120219000-120241400	Weak transcription	NHEK	skin
9	chr12:120220000-120240600	Weak transcription	Fetal Lung	lung
10	chr12:120221600-120241000	Weak transcription	NH-A	brain
11	chr12:120221600-120241400	Weak transcription	HMEC	breast
12	chr12:120221800-120241400	Weak transcription	HSMM	muscle
13	chr12:120222000-120241200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr12:120222800-120241000	Weak transcription	Fetal Intestine Small	intestine
15	chr12:120223000-120239800	Weak transcription	Brain Germinal Matrix	brain
16	chr12:120223000-120255800	Weak transcription	HepG2	liver
17	chr12:120223000-120314400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr12:120223200-120239800	Weak transcription	Osteobl	bone
19	chr12:120223200-120242000	Weak transcription	HUVEC	blood vessel
20	chr12:120224400-120241200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr12:120226600-120239400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr12:120226600-120241000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr12:120227000-120241000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr12:120227000-120241000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr12:120227200-120239400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr12:120229000-120242400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr12:120229400-120256600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr12:120230200-120241400	Weak transcription	HSMMtube	muscle
29	chr12:120231000-120238200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr12:120231000-120244800	Strong transcription	Dnd41	blood
31	chr12:120231200-120237400	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr12:120231200-120237600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr12:120231200-120238400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr12:120231200-120243800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr12:120232000-120239800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr12:120232000-120240600	Weak transcription	NHLF	lung
37	chr12:120232000-120246000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr12:120232400-120240000	Weak transcription	Fetal Muscle Leg	muscle
39	chr12:120232400-120241000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr12:120232400-120241200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr12:120232400-120241600	Weak transcription	K562	blood
42	chr12:120232600-120239000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr12:120232600-120241000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr12:120232800-120241400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr12:120233000-120241000	Weak transcription	Fetal Heart	heart
46	chr12:120233600-120238400	Strong transcription	Thymus	Thymus
47	chr12:120233600-120242000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr12:120233800-120237600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr12:120233800-120239000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr12:120234400-120241000	Weak transcription	Fetal Muscle Trunk	muscle

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