Variant report

Variant	rs7968986
Chromosome Location	chr12:9174146-9174147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12304948	1.00[EUR][1000 genomes]
rs1805699	1.00[EUR][1000 genomes]
rs1805713	1.00[EUR][1000 genomes]
rs3026250	1.00[EUR][1000 genomes]
rs55770136	1.00[EUR][1000 genomes]
rs60862093	1.00[EUR][1000 genomes]
rs61749078	1.00[AMR][1000 genomes]
rs6487550	1.00[EUR][1000 genomes]
rs7132096	1.00[AMR][1000 genomes]
rs7133355	1.00[EUR][1000 genomes]
rs7138661	1.00[AMR][1000 genomes]
rs7957548	1.00[AMR][1000 genomes]
rs7971254	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832327	chr12:9081779-9246220	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	esv2754892	chr12:9136351-9179007	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv973020	chr12:9163929-9182709	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9165800-9182400	Weak transcription	Adipose Nuclei	Adipose
2	chr12:9168600-9175200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr12:9169000-9174600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr12:9169000-9176000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr12:9170400-9174800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr12:9170400-9174800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr12:9171000-9177000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr12:9173200-9174800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr12:9173400-9174800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr12:9173400-9175400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr12:9173600-9174600	Weak transcription	Primary T cells from cord blood	blood
12	chr12:9173800-9175000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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