Variant report

Variant	rs7968987
Chromosome Location	chr12:118079630-118079631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10437852	0.81[EUR][1000 genomes]
rs10437853	0.82[EUR][1000 genomes]
rs10850863	0.80[EUR][1000 genomes]
rs10850864	0.80[EUR][1000 genomes]
rs10850865	0.80[EUR][1000 genomes]
rs10850866	0.80[EUR][1000 genomes]
rs10850867	0.80[EUR][1000 genomes]
rs10850868	0.80[EUR][1000 genomes]
rs10850869	0.80[EUR][1000 genomes]
rs10850870	0.80[EUR][1000 genomes]
rs10850871	0.80[EUR][1000 genomes]
rs10850872	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10850874	0.91[ASN][1000 genomes]
rs11068590	0.80[EUR][1000 genomes]
rs11068591	0.80[EUR][1000 genomes]
rs11068592	0.80[EUR][1000 genomes]
rs11068593	0.80[EUR][1000 genomes]
rs12300780	0.80[EUR][1000 genomes]
rs1568155	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1568156	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1878421	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1878422	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1878423	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2393241	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2393242	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2393244	0.81[EUR][1000 genomes]
rs2393245	0.81[EUR][1000 genomes]
rs2393246	0.81[EUR][1000 genomes]
rs2393247	0.81[EUR][1000 genomes]
rs2393248	0.81[EUR][1000 genomes]
rs2393249	0.80[EUR][1000 genomes]
rs3956806	0.82[EUR][1000 genomes]
rs67089503	0.83[ASN][1000 genomes]
rs7134816	0.80[EUR][1000 genomes]
rs7305714	0.80[EUR][1000 genomes]
rs7309018	0.80[EUR][1000 genomes]
rs7965878	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7968512	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7979936	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7968987	C12orf51	cis	cerebellum	SCAN
rs7968987	NOS1	cis	cerebellum	SCAN
rs7968987	HSPB8	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118076600-118089000	Weak transcription	Pancreas	Pancrea

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