Variant report

Variant	rs7969083
Chromosome Location	chr12:106310945-106310946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11112795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11829465	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs12299915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1421468	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17037880	1.00[AMR][1000 genomes]
rs59992427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106307600-106313800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr12:106307600-106313800	Weak transcription	Fetal Lung	lung
3	chr12:106310000-106311000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr12:106310600-106311000	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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