Variant report

Variant	rs7970236
Chromosome Location	chr12:10445373-10445374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10772250	1.00[YRI][hapmap]
rs2087308	1.00[JPT][hapmap]
rs2537783	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2908450	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs34091713	0.82[AFR][1000 genomes]
rs34512570	1.00[AFR][1000 genomes]
rs4237965	1.00[JPT][hapmap]
rs7960909	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10444000-10445600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr12:10444400-10445400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr12:10445000-10446200	Enhancers	Primary T cells from cord blood	blood
4	chr12:10445200-10446400	Enhancers	Primary T cells fromperipheralblood	blood
5	chr12:10445200-10446800	Enhancers	Thymus	Thymus
6	chr12:10445200-10447000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr12:10445200-10447000	Enhancers	GM12878-XiMat	blood
8	chr12:10445200-10447200	Enhancers	Fetal Thymus	thymus
9	chr12:10445200-10447600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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