Variant report
| Variant | rs7970367 |
|---|---|
| Chromosome Location | chr12:46392713-46392714 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:46382194..46387214-chr12:46392482..46398742,9 | MCF-7 | breast: | |
| 2 | chr12:46383923..46387292-chr12:46390382..46393242,5 | MCF-7 | breast: | |
| 3 | chr12:46389987..46392891-chr12:46396271..46398091,2 | K562 | blood: | |
| 4 | chr12:46390655..46393206-chr12:46396271..46400048,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000139218 | Chromatin interaction |
| ENSG00000239397 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10161536 | 1.00[EUR][1000 genomes] |
| rs10506264 | 1.00[EUR][1000 genomes] |
| rs11183248 | 1.00[EUR][1000 genomes] |
| rs11574971 | 1.00[EUR][1000 genomes] |
| rs12298184 | 1.00[EUR][1000 genomes] |
| rs12307979 | 1.00[EUR][1000 genomes] |
| rs1549591 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs15852 | 1.00[EUR][1000 genomes] |
| rs17096316 | 1.00[EUR][1000 genomes] |
| rs61009645 | 1.00[EUR][1000 genomes] |
| rs6582580 | 1.00[EUR][1000 genomes] |
| rs7304785 | 1.00[EUR][1000 genomes] |
| rs7306774 | 1.00[EUR][1000 genomes] |
| rs7310702 | 1.00[EUR][1000 genomes] |
| rs74081279 | 1.00[EUR][1000 genomes] |
| rs74081280 | 1.00[EUR][1000 genomes] |
| rs74081611 | 1.00[EUR][1000 genomes] |
| rs7965539 | 1.00[EUR][1000 genomes] |
| rs7970212 | 1.00[EUR][1000 genomes] |
| rs7971936 | 1.00[EUR][1000 genomes] |
| rs7972499 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832397 | chr12:46265990-46453733 | Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
| 2 | nsv983463 | chr12:46377328-46403983 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:46389000-46394800 | Weak transcription | HepG2 | liver |
