Variant report

Variant	rs79709859
Chromosome Location	chr1:169707103-169707104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 11 )

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv3333264	chr1:169705778-169707626	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs79709859	METTL18	cis	Esophagus Muscularis	GTEx
rs79709859	METTL18	cis	Thyroid	GTEx
rs79709859	METTL18	cis	lung	GTEx
rs79709859	METTL18	cis	Artery Tibial	GTEx
rs79709859	METTL18	cis	Esophagus Mucosa	GTEx
rs79709859	METTL18	cis	Heart Left Ventricle	GTEx
rs79709859	METTL18	cis	Nerve Tibial	GTEx
rs79709859	METTL18	cis	Stomach	GTEx
rs79709859	METTL18	cis	Adipose Subcutaneous	GTEx
rs79709859	METTL18	cis	Muscle Skeletal	GTEx
rs79709859	METTL18	cis	Artery Aorta	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169703800-169707800	Weak transcription	HUVEC	blood vessel
2	chr1:169706400-169710200	Weak transcription	Liver	Liver
3	chr1:169706800-169707200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr1:169706800-169707400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:169706800-169707400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:169707000-169710200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr1:169707000-169710200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:169707000-169710400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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