Variant report

Variant	rs7971785
Chromosome Location	chr12:121770321-121770322
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121765019..121767812-chr12:121769391..121771266,3	K562	blood:
2	chr12:121765884..121767945-chr12:121769635..121773990,4	K562	blood:
3	chr12:121769680..121771948-chr12:121876762..121878307,2	K562	blood:

Variant related genes	Relation type
ENSG00000089053	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10774591	1.00[CEU][hapmap]
rs1169804	1.00[CEU][hapmap]
rs12579382	0.86[ASN][1000 genomes]
rs2001701	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2007651	0.86[JPT][hapmap]
rs2280067	0.86[JPT][hapmap];0.82[MEX][hapmap];0.84[ASN][1000 genomes]
rs2461474	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2686356	0.82[ASN][1000 genomes]
rs2686358	0.86[ASN][1000 genomes]
rs2686359	0.86[ASN][1000 genomes]
rs2686367	0.84[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2942064	0.83[CHD][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];0.90[ASN][1000 genomes]
rs2942065	0.90[ASN][1000 genomes]
rs2942067	0.83[CHD][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];0.86[ASN][1000 genomes]
rs2948123	0.84[ASN][1000 genomes]
rs2948127	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2948129	0.86[JPT][hapmap];0.82[MEX][hapmap];0.84[ASN][1000 genomes]
rs2948132	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3751162	0.83[CHD][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];0.84[ASN][1000 genomes]
rs4980993	1.00[CEU][hapmap]
rs59997381	0.91[ASN][1000 genomes]
rs7134657	0.83[CHD][hapmap];0.86[JPT][hapmap]
rs7297531	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73405752	0.80[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121744200-121783400	Weak transcription	Stomach Mucosa	stomach
2	chr12:121751200-121785600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:121751400-121785800	Strong transcription	Fetal Thymus	thymus
4	chr12:121752000-121785800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr12:121752000-121787000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:121752400-121776000	Strong transcription	Duodenum Mucosa	Duodenum
7	chr12:121753200-121786000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:121753400-121786000	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr12:121753800-121775600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr12:121754000-121770400	Strong transcription	Primary T cells from cord blood	blood
11	chr12:121754000-121776000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr12:121754000-121785600	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr12:121754000-121785800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr12:121754000-121786000	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr12:121754400-121776000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr12:121754600-121772400	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr12:121754800-121772400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr12:121754800-121775600	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr12:121754800-121784800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr12:121754800-121784800	Strong transcription	Fetal Stomach	stomach
21	chr12:121755600-121772000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr12:121757400-121772400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr12:121757800-121776200	Strong transcription	Thymus	Thymus
24	chr12:121758200-121772200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr12:121759800-121786400	Strong transcription	Dnd41	blood
26	chr12:121760200-121775600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr12:121760200-121776000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr12:121760200-121785800	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr12:121760200-121786000	Strong transcription	Primary B cells from peripheral blood	blood
30	chr12:121760400-121772400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr12:121760400-121773200	Strong transcription	GM12878-XiMat	blood
32	chr12:121760400-121776400	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr12:121760600-121772000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr12:121760600-121776000	Strong transcription	Stomach Smooth Muscle	stomach
35	chr12:121760600-121784400	Strong transcription	Left Ventricle	heart
36	chr12:121760800-121775600	Strong transcription	Placenta	Placenta
37	chr12:121760800-121775600	Strong transcription	K562	blood
38	chr12:121760800-121785400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr12:121761000-121772600	Strong transcription	Adipose Nuclei	Adipose
40	chr12:121761000-121772600	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr12:121761000-121775400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr12:121761000-121775800	Strong transcription	HepG2	liver
43	chr12:121761000-121776200	Strong transcription	Primary B cells from cord blood	blood
44	chr12:121761200-121770400	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr12:121761200-121772200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr12:121761200-121775800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr12:121761400-121775800	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr12:121761400-121785200	Strong transcription	Osteobl	bone
49	chr12:121761600-121772400	Strong transcription	NHDF-Ad	bronchial
50	chr12:121761600-121774000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood

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