Variant report

Variant	rs7972826
Chromosome Location	chr12:83140079-83140080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:83133232..83134776-chr12:83139267..83141061,2	MCF-7	breast:
2	chr12:83138681..83143794-chr12:83143962..83149750,5	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs61043208	1.00[EUR][1000 genomes]
rs6539685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7296617	1.00[EUR][1000 genomes]
rs73356345	1.00[EUR][1000 genomes]
rs7972064	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053093	chr12:82645292-83287809	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv541551	chr12:82645292-83287809	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv899348	chr12:82744187-83169297	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv427917	chr12:82917031-83279712	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv469490	chr12:83089431-83507269	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv559542	chr12:83089431-83507269	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	esv2758315	chr12:83101045-83357621	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv2759911	chr12:83101045-83357621	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv2755991	chr12:83105631-83248605	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv469491	chr12:83108395-83203742	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv559543	chr12:83108395-83203742	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv2754173	chr12:83125000-83245838	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv2754509	chr12:83133090-83203742	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv999149	chr12:83137872-83206342	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83102600-83140600	Weak transcription	Pancreas	Pancrea
2	chr12:83122000-83149000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr12:83122800-83140200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr12:83122800-83143600	Weak transcription	Lung	lung
5	chr12:83123000-83140400	Weak transcription	Gastric	stomach
6	chr12:83123000-83140600	Weak transcription	Esophagus	oesophagus
7	chr12:83134600-83140200	Weak transcription	Right Ventricle	heart
8	chr12:83134800-83140200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr12:83134800-83140200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:83134800-83140200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr12:83134800-83140200	Weak transcription	Stomach Mucosa	stomach
12	chr12:83134800-83140400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr12:83134800-83142800	Weak transcription	NHLF	lung
14	chr12:83135000-83140400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr12:83135000-83140600	Weak transcription	A549	lung
16	chr12:83136800-83140400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr12:83137600-83141600	Enhancers	Brain Substantia Nigra	brain
18	chr12:83137800-83140800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr12:83138000-83140600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr12:83138000-83140800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr12:83138200-83143000	Enhancers	Brain Cingulate Gyrus	brain
22	chr12:83138400-83140800	Enhancers	Rectal Smooth Muscle	rectum
23	chr12:83138400-83141000	Enhancers	Brain Germinal Matrix	brain
24	chr12:83138400-83151400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr12:83138600-83140800	Enhancers	Colon Smooth Muscle	Colon
26	chr12:83138800-83140600	Enhancers	Fetal Heart	heart
27	chr12:83138800-83140800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr12:83138800-83141600	Enhancers	Brain Anterior Caudate	brain
29	chr12:83139000-83141000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr12:83139200-83140200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr12:83139200-83142200	Enhancers	Brain Hippocampus Middle	brain
32	chr12:83139400-83140400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr12:83139400-83140400	Weak transcription	Fetal Kidney	kidney
34	chr12:83139600-83140800	Enhancers	Placenta Amnion	Placenta Amnion
35	chr12:83139600-83141000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr12:83139600-83144200	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr12:83139800-83140200	Weak transcription	Brain Angular Gyrus	brain
38	chr12:83139800-83140200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr12:83139800-83140800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr12:83139800-83141000	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr12:83139800-83143800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr12:83139800-83143800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr12:83139800-83150200	Weak transcription	Fetal Lung	lung
44	chr12:83140000-83140200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr12:83140000-83140400	Enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links