Variant report

Variant	rs7973928
Chromosome Location	chr12:119813714-119813715
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3915269	1.00[JPT][hapmap]
rs7959400	1.00[JPT][hapmap]
rs7973138	1.00[YRI][hapmap]
rs7977946	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv899552	chr12:119733874-119814623	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv916688	chr12:119801814-120044407	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119810000-119814400	Enhancers	Fetal Lung	lung
2	chr12:119811400-119814800	Weak transcription	Esophagus	oesophagus
3	chr12:119811400-119816600	Weak transcription	Colon Smooth Muscle	Colon
4	chr12:119811400-119819600	Weak transcription	Lung	lung
5	chr12:119812600-119814000	Enhancers	Right Ventricle	heart
6	chr12:119812600-119814200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr12:119812600-119814200	Enhancers	Left Ventricle	heart
8	chr12:119812800-119813800	Enhancers	GM12878-XiMat	blood
9	chr12:119812800-119814000	Enhancers	Right Atrium	heart
10	chr12:119812800-119814200	Enhancers	Fetal Muscle Leg	muscle
11	chr12:119812800-119814200	Enhancers	Placenta	Placenta
12	chr12:119813000-119814000	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr12:119813200-119813800	Enhancers	Fetal Thymus	thymus
14	chr12:119813200-119814000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr12:119813200-119814000	Enhancers	Fetal Heart	heart
16	chr12:119813200-119814200	Enhancers	Primary B cells from peripheral blood	blood
17	chr12:119813400-119814000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr12:119813600-119813800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links