Variant report

Variant	rs7974190
Chromosome Location	chr12:21988664-21988665
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11046203	0.91[AFR][1000 genomes]
rs12303511	1.00[EUR][1000 genomes]
rs12309983	1.00[EUR][1000 genomes]
rs12316669	1.00[EUR][1000 genomes]
rs12319089	1.00[EUR][1000 genomes]
rs2955502	1.00[EUR][1000 genomes]
rs4072818	1.00[EUR][1000 genomes]
rs7294814	1.00[EUR][1000 genomes]
rs73268247	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557741	chr12:21578559-22169854	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1051073	chr12:21910875-22271209	Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv470275	chr12:21938544-22126314	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21958400-22003000	Weak transcription	Psoas Muscle	Psoas
2	chr12:21973800-21994800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:21973800-22025400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr12:21980600-22002800	Weak transcription	Fetal Heart	heart
5	chr12:21981800-21991000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr12:21982000-21989200	Weak transcription	Left Ventricle	heart
7	chr12:21982000-21989400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr12:21983600-22002800	Strong transcription	Liver	Liver
9	chr12:21983800-22002000	Strong transcription	Skeletal Muscle Female	skeletal muscle
10	chr12:21983800-22003000	Weak transcription	Pancreas	Pancrea
11	chr12:21984800-21991400	Weak transcription	Fetal Muscle Leg	muscle
12	chr12:21984800-21994200	Weak transcription	Fetal Kidney	kidney
13	chr12:21984800-21995000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr12:21985000-22003000	Weak transcription	Right Ventricle	heart
15	chr12:21985400-21988800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr12:21985400-21993400	Weak transcription	Fetal Stomach	stomach
17	chr12:21985400-21995200	Weak transcription	Ovary	ovary
18	chr12:21985400-21996600	Weak transcription	NHDF-Ad	bronchial
19	chr12:21985400-22005000	Weak transcription	NHLF	lung
20	chr12:21985600-21994800	Weak transcription	Adipose Nuclei	Adipose
21	chr12:21985600-22002800	Weak transcription	Fetal Lung	lung
22	chr12:21985800-21989400	Weak transcription	Colon Smooth Muscle	Colon
23	chr12:21985800-21994800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr12:21985800-22004800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr12:21987200-21991600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links