Variant report

Variant	rs7974238
Chromosome Location	chr12:8209576-8209577
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:8209418..8211639-chr12:8218119..8220540,2	K562	blood:
2	chr12:8178837..8181131-chr12:8206683..8209804,4	K562	blood:
3	chr12:8200360..8202446-chr12:8208101..8209875,2	K562	blood:

Variant related genes	Relation type
ENSG00000171860	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11567794	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048545	chr12:7778760-8608231	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv541368	chr12:7778760-8608231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
3	esv1795892	chr12:7856819-8508693	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
4	esv2758292	chr12:7856819-8623987	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
5	esv2759877	chr12:7856819-8623987	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
6	nsv428270	chr12:7856819-8623987	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
7	esv1797934	chr12:7985460-8214261	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
8	esv1793572	chr12:7995827-8568422	Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	nsv1040972	chr12:8003413-8266291	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
10	nsv541388	chr12:8003413-8266291	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
11	nsv916941	chr12:8003501-8608220	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
12	nsv1045521	chr12:8123225-8242846	Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
13	nsv1040958	chr12:8177050-8309724	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
14	nsv541396	chr12:8177050-8309724	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8192000-8211000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr12:8192400-8211000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:8192600-8212400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:8201000-8211200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:8201000-8211600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:8202200-8210600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr12:8202600-8211200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr12:8203000-8210200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr12:8203000-8218800	Weak transcription	HMEC	breast
10	chr12:8203200-8210800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr12:8203400-8217400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr12:8205600-8210400	Weak transcription	Fetal Intestine Small	intestine
13	chr12:8205600-8211400	Weak transcription	HUVEC	blood vessel
14	chr12:8205600-8212400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr12:8205600-8214200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr12:8205600-8218800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr12:8205600-8218800	Weak transcription	Hela-S3	cervix
18	chr12:8206000-8214000	Weak transcription	Pancreas	Pancrea
19	chr12:8206000-8221600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr12:8206200-8209600	Weak transcription	Brain Angular Gyrus	brain
21	chr12:8206200-8209800	Weak transcription	Right Ventricle	heart
22	chr12:8206200-8210800	Weak transcription	NHEK	skin
23	chr12:8206200-8217200	Weak transcription	K562	blood
24	chr12:8206200-8218800	Weak transcription	NH-A	brain
25	chr12:8206400-8209600	Weak transcription	Fetal Kidney	kidney
26	chr12:8206600-8210000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr12:8206600-8210800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr12:8206600-8212200	Weak transcription	Spleen	Spleen
29	chr12:8206600-8216800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr12:8206800-8211200	Weak transcription	Small Intestine	intestine
31	chr12:8206800-8218400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr12:8207600-8211400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr12:8207600-8215400	Weak transcription	Colonic Mucosa	Colon
34	chr12:8207600-8217200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr12:8207600-8217800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr12:8207600-8218800	Weak transcription	NHDF-Ad	bronchial
37	chr12:8207800-8209600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr12:8207800-8210000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr12:8207800-8211000	Weak transcription	NHLF	lung
40	chr12:8207800-8212200	Weak transcription	Lung	lung
41	chr12:8207800-8217000	Weak transcription	Placenta	Placenta
42	chr12:8207800-8218000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr12:8207800-8218400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr12:8207800-8221400	Weak transcription	Brain Substantia Nigra	brain
45	chr12:8208000-8209600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr12:8208000-8209800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr12:8208000-8209800	Weak transcription	Esophagus	oesophagus
48	chr12:8208000-8209800	Weak transcription	Fetal Brain Male	brain
49	chr12:8208000-8209800	Weak transcription	Fetal Lung	lung
50	chr12:8208000-8210400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links