Variant report

Variant	rs7974797
Chromosome Location	chr12:62045263-62045264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10784259	0.82[CEU][hapmap]
rs10877700	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10877707	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10877713	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10877714	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10877715	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10877717	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10877719	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10877723	0.90[CEU][hapmap]
rs10877724	0.82[CEU][hapmap]
rs10877727	0.82[CEU][hapmap]
rs10877728	0.81[CEU][hapmap]
rs10877734	0.81[CEU][hapmap]
rs10877736	0.81[CEU][hapmap]
rs10877738	0.81[CEU][hapmap]
rs10877740	0.82[CEU][hapmap]
rs11174116	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174122	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174125	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174126	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174141	0.81[CEU][hapmap]
rs11174148	0.82[CEU][hapmap]
rs11174152	0.81[CEU][hapmap]
rs11174176	0.80[CEU][hapmap]
rs11608376	0.82[CEU][hapmap]
rs11609247	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11609657	0.82[CEU][hapmap]
rs11613304	0.81[CEU][hapmap]
rs11834964	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12304279	0.81[CEU][hapmap]
rs12369048	0.81[CEU][hapmap]
rs12422748	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12423291	0.81[CEU][hapmap]
rs12424350	0.81[CEU][hapmap]
rs12579881	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12581923	0.80[CEU][hapmap]
rs12582016	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12809729	0.82[CEU][hapmap]
rs12814204	0.81[CEU][hapmap]
rs12827424	0.81[CEU][hapmap]
rs12830041	0.81[CEU][hapmap]
rs1395490	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1580975	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17577005	0.81[CEU][hapmap]
rs2061207	0.81[CEU][hapmap]
rs2063063	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2067911	0.82[CEU][hapmap]
rs2198773	0.80[CEU][hapmap]
rs2198774	0.82[CEU][hapmap]
rs2219259	0.81[CEU][hapmap]
rs2219260	0.84[CEU][hapmap]
rs34032839	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4482081	0.82[CEU][hapmap]
rs4616113	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61941851	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6581424	0.82[CEU][hapmap]
rs7132727	0.82[CEU][hapmap]
rs7137618	0.81[CEU][hapmap]
rs717271	0.82[CEU][hapmap]
rs724986	0.80[CEU][hapmap]
rs7294711	0.81[CEU][hapmap]
rs7306758	0.81[CEU][hapmap]
rs7484594	0.81[CEU][hapmap]
rs7484749	0.81[CEU][hapmap]
rs7484947	0.81[CEU][hapmap]
rs7487085	0.81[CEU][hapmap]
rs7958577	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7968946	0.82[CEU][hapmap]
rs7977604	0.81[CEU][hapmap]
rs7979124	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62042200-62048000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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